Ruditapes philippinarum (Manila clam): 132716586
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Entry
132716586 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: TBC1 domain family member 5-like
KO
K18469
TBC1 domain family member 5
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rphi04131
]
132716586
Membrane trafficking [BR:
rphi04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
132716586
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RabGAP-TBC
RabGap-TBC_2
TBCA
Motif
Other DBs
NCBI-GeneID:
132716586
NCBI-ProteinID:
XP_060555874
LinkDB
All DBs
Position
Unknown
AA seq
672 aa
AA seq
DB search
MDKMLNRLRSMSGTKLKSPTNENLPPVPAQPPSKEDILNTLDGFGEKIQEVPPHEDNNNI
HVRRSSYTSVDSENSMDTTACDTEPTITSITHSYSLEWEKLFMKQGYLRHLRNYAMKGNL
RSSRFRSISWKLFLGVLPEEPSMWIAKTKQLRSKYKDLKDKLIVNPRKAVDTVDLTFNNP
LSQEDESPWNRFFLDNELRLTIKQDVIRTFPEIQFYHSEDVRDMMINVLFCYAREHDSLS
YRQGMHELLAPMIFVLHCDHQAFLHASEMESLDEKIKCVLDPKYLEHDAYAMFSQVMQTM
EPWYVSKEVYPTKQATDPSCSQPFARPQDLNPSNVIVTKLTRIQDYLLKKADLELHMHLE
RHEIAPQIYGIRWIRLAVWREFPMQDLLVLWDAIFADGIGFDLVDFIFVAMLLYLRDHFQ
VPRHLRDPHQYPRPPKYTYQSVQTAERSQPQQPKASASSKPHSSSSSLQSFTRKFYTTSR
PKSLTVTGRQKISKSSSEPMNLQTEISPDSPPPGNVPQHKRGSSASLSHVEDSMFRSAQS
SGSLTKFETQSLRSAVTTPEDSSVNGSPTRYATMPTRGKLKHKKQAVDPAADAEIAALRG
VLHDKESMCNYCASKLDRHIERLQAQFLRQNLENEDEILVAIAGIKQVRDVLKGTLRFSR
SLLDEDDNEISI
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggacaagatgttgaatcgtttaaggtctatgagtggaacaaagttaaaaagtccgaca
aatgagaacctgccaccggtcccggcacagccgcccagcaaggaagatattcttaatact
ttagatggatttggggaaaaaatacaagaggttcctccacatgaagacaacaacaacata
catgtacgacgtagcagttatacgagtgtggacagtgagaacagtatggatacaacagcc
tgtgatacggagcccactattacaagtataacacattcttatagtttagaatgggagaaa
ttgttcatgaaacaaggatatctgcggcacctgagaaattacgcgatgaagggaaattta
cgtagcagtagattcaggagtatttcttggaagttatttcttggtgttttacctgaagag
ccctcaatgtggatagcaaagactaaacagttacgaagtaaatacaaagaccttaaagat
aagttgattgtgaacccacgtaaagcagtggatacagtagatctaacatttaataacccg
ttatcacaggaggatgagagtccatggaacagatttttcttagacaatgagttgagactg
accatcaaacaagatgtcataagaacttttcccgagatacagttttaccactcggaggat
gttcgggacatgatgatcaatgtcttattttgttacgcgagagaacatgactcattatca
tatagacaggggatgcacgagttattggcaccaatgatatttgtcctacactgtgatcac
caagcattcctgcatgcatctgagatggaatcattagatgagaagattaaatgtgtgttg
gatcccaaatatcttgagcatgatgcatatgcaatgttttctcaagtgatgcaaactatg
gaaccttggtatgtgtcaaaggaagtttaccctacaaagcaagctacagatccttcatgc
tcccagccgtttgccagaccacaggatctgaacccttctaatgtgattgtgacaaaactg
acccgaatacaggactatctgctgaagaaagctgaccttgaacttcatatgcatctagag
agacatgaaatagctcctcagatatatggcattcgctggatccgtcttgctgtttggagg
gaattcccgatgcaagatttgctagttttgtgggacgcaatatttgcagatggtatagga
tttgatctggtcgattttatctttgttgccatgttgctttaccttagagaccattttcaa
gtgccccgccatcttcgagaccctcatcaatatcctcgtccaccaaaatatacgtaccaa
agtgttcaaactgctgaaagaagtcagcctcaacaacctaaagcttctgcaagttcaaag
ccacactcaagttctagttcactgcagtcatttacccgtaaattctacaccacgtcccga
cctaaatcactaactgtgacaggtcgacaaaaaatatctaagtcatccagtgaacccatg
aacttgcagaccgagatatcaccagatagtcctccaccaggaaatgtacctcagcacaag
aggggttcatcagctagtctctcacatgttgaggactctatgttcaggtcggcacagtcc
agtggtagcctaacaaagtttgaaacccagagtttgaggtcagctgtcaccacaccggaa
gattcatcggtgaatggaagtccaactcgatatgctaccatgccaactagagggaaactt
aaacacaaaaaacaggctgtggatcctgctgcagatgctgagatagctgcgttacgaggt
gttctacacgataaggaatccatgtgtaattactgcgccagtaaacttgaccgtcatata
gagagactgcaagcccagtttttacgtcaaaatttagaaaatgaagacgagatactggtg
gcaatagctggaattaaacaggtacgagatgtgttgaaagggacgttgagatttagtcgc
agtcttctagacgaggacgataacgagatcagtatc
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