Ruditapes philippinarum (Manila clam): 132716676
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Entry
132716676 CDS
T09557
Name
(RefSeq) F-box and WD repeat domain containing protein 10B-like isoform X1
KO
K10266
F-box and WD-40 domain protein 10
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rphi04121
]
132716676
Ubiquitin system [BR:
rphi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
132716676
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
WD40_WDHD1_1st
EIF3I
WD40_CDC20-Fz
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_SCAP
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
F-box-like
F-box
WDR90_beta-prop_4th
WD40_like
Beta-prop_WDR11_2nd
Beta-prop_DCAF12
Beta-prop_IP5PC_F
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
132716676
NCBI-ProteinID:
XP_060555977
LinkDB
All DBs
Position
Unknown
AA seq
1266 aa
AA seq
DB search
MMLEVCRYSDASSITSLDDLSELDDIMMKHSAPNVEVFEFNLGRAPLLRCVKTEKSSACN
ECETCKLSIKLREIKQWFPRLGDHSKKRFMLGLMQRTHSAELLKQVVTLLQPVLCKDFTY
SRSRTNPSLSTDNPTLSSDRALPAKKVDNYIITSWQWYGEANYWSKANFALVLLQMCDAH
LLHTIGAQAKTLLISEEKAAREFGESVYTECGSIASSNFTYKTDEHPDLELLTTVSQQYG
QDQNNPFTGTSLPGYDLGDDIENGDGDDDFYDDTSSSLDPAYMVIPTSAKAYVGVARHSD
MIRLLPVHISKMILSMLDKTSLMNALCVSSAWRILVEEVHRDAYVNQQLWEEVMLMQGDT
ILQGIKGASAQGVNPVYAKDIDVLVPNTDYQTGHVIRNNDTVIKTTFKSEVSFDTAFSGV
STRKVIMEERNVYCGPYNVLVLCDSEDHHRVFHTDGGKLIAIGSKDRKIRFVDNTSGREH
KRMTKGESNDDELPVITGHAGSIRCVHIIEKQGLVLSGSYDTSIRMWSVHTGHCLKIFRG
HRDTVLTIRTLGDLLISGSKDKSCKVWDMQTGKCQRSYRHRYPVTAVAMSKETVISGCES
GKVKVWELRSGNLIKVLNGHHEGVTAIQFDRWHIVTAGRDGYALVWSAIGDHNRCLSALR
HPKEVLCLEFMYLRCITGSADGRIRIWNIITGQCCRIMRGNSRSDPILDIIAIDNRITIN
TAINLLVLNFEEVEWNYNLNEDKVPPLVQYSSYSDAPVRQQPYPYIRAQRMKKAGAANTK
ILNKEEVKESTKPPIPQLSFRAHQLPHSAKTLSAKSLGSARAIQQVPIESVYSQSRASKS
ATCIDRKALSIKRATTLSTQSKPPLPGSSKPRPQTSKSAQSGYSVTIMDDVAEQEWEEQE
WREPIRLQRRISWAFEQPIVPNTKDISLSETKSLLRSQMRMKNESIVPPDFIYLTVNAIQ
NSMQPSETSANTEQNILDRKLDTRLRKNRPSSSPSKLDPRTRIPVEQIDLSQFQDKEDND
SLSEISDHRSIKSAKSKDSIPAATDKEIYATKCQVKPLKTSPKVSVHPKRIRTTLPKGRV
IRPISASVTRKEPYVPEKGDESKLGRPITAPALRVRPDTASTLPSHIAASMPGVHPPRRK
QQNISTTGYEANIVPMLMYPADMKEKLATLLKEKRQHRTDEHLESASEMGLGKVSHFNDP
MRSHVKFELRTHNQERDYITETEKHYKERQKREEEMLEKKKRVLWTAKAKGGKISRVNSA
PVGFSN
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgatgttggaggtgtgtcgttacagtgatgcatccagcattacctcccttgatgatctg
tctgaacttgatgacatcatgatgaaacattccgctccaaacgtagaggtgttcgaattt
aatctcggacgtgcacctctattaagatgtgtaaaaactgaaaaatcatctgcatgtaac
gagtgtgagacatgtaaactgtctataaagttacgagagatcaaacagtggtttcctcgt
ctaggagaccattcaaagaaacgttttatgttaggactcatgcaaaggactcatagtgcc
gagctccttaagcaagttgtgaccctgttacaaccagtgttgtgtaaagattttacttat
tcccgcagcaggacaaatccaagtttatcaacagataatccaaccctcagttcagacagg
gctcttccagctaagaaagttgataattatattattacatcatggcaatggtatggtgaa
gctaattattggagcaaggcaaactttgctcttgtcctactacagatgtgtgatgctcat
ttactgcacactattggtgctcaggccaagactttgctcatttcggaggaaaaagctgca
agggagtttggagagtctgtgtacactgagtgtggctcgatagcttccagtaactttaca
tacaaaacagatgagcaccctgaccttgaacttctgacaacagtcagtcaacagtatggt
caagaccagaacaatcctttcactggcacatccctccctggttacgaccttggcgatgac
attgaaaatggtgatggtgatgatgatttctatgatgacaccagttcctcgctggatcca
gcgtacatggttataccaacatcagcaaaagcttacgttggtgttgccaggcacagtgat
atgatacgactgttgccagttcatatctcaaagatgatactgagtatgcttgacaagaca
tctttgatgaatgcactatgtgtgagctcagcatggcgtatactagtagaagaggtgcat
agagatgcctacgttaaccaacaactctgggaggaagtcatgctgatgcagggagacaca
atattgcagggaataaagggcgcatcagctcagggtgtcaatccagtgtatgccaaagat
atcgatgtgctggttcctaacacagattatcagacaggtcatgtgatcagaaacaatgat
actgtgattaagacaaccttcaagagtgaagtcagttttgacacggccttcagtggtgta
tcaactaggaaagtcattatggaggagagaaacgtgtactgtggtccatacaatgttctg
gtgctgtgtgacagtgaggatcaccacagggtgtttcatactgatggaggaaaactcatt
gcaattggctcaaaagacagaaagattcgtttcgtagacaacacatcaggtcgcgagcac
aagagaatgacgaaaggggaaagcaatgatgatgaacttccagttataactggtcacgct
ggctcaatacgatgtgtacatattatagagaaacaaggcttagttctcagtggcagctac
gataccagtattaggatgtggagtgtacatacagggcattgtttgaagattttccgtgga
cacagagatactgttctaactataagaacacttggtgatctactcatttctggctccaag
gataaatcttgtaaagtctgggacatgcagacaggaaaatgtcaaaggtcatatcgtcat
aggtatcctgtaacagctgttgccatgtcaaaagaaacagtaatttctggctgtgaaagt
ggaaaagtaaaagtgtgggaactgagatctggcaacttaataaaggtattgaacggacat
cacgagggtgtgacagccattcagtttgatcgttggcatattgtgactgcaggcagggat
ggttacgcccttgtctggagtgccattggtgatcataatagatgtctctccgctcttaga
catccaaaggaggtgttgtgcctggagtttatgtatctacgttgtatcactggctcagct
gacggacgtatcaggatctggaatattataactggacaatgttgtagaatcatgagggga
aatagccgaagtgatcccattctagatataattgccattgacaatagaattacaatcaac
actgccataaatttgttagtattgaatttcgaggaagtagaatggaactacaacttaaat
gaagacaaagtaccaccattggtccagtattcttcttactcagatgctcctgttaggcaa
caaccatatccctacatcagagcacagagaatgaagaaagcaggggctgctaatactaaa
atactgaataaagaagaggtcaaagagtccactaaaccacctataccacagttgtcattt
agagctcatcaacttccacacagtgctaaaaccttatctgccaaaagtcttggaagtgca
agagctatacaacaagtgcctatagaaagcgtgtactcacaaagcagggcttctaaaagt
gccacctgcatcgatcgaaaagcattgtcaattaaaagagctactactttatctactcag
tctaaacctcctttacctggctcttcaaaaccccgtccacaaacatcaaagtctgcccaa
tcgggttactcagttacaattatggatgatgtagctgagcaagagtgggaggagcaagaa
tggcgggaaccaatcaggctccagcgtagaatttcttgggcatttgaacaacctatagtg
ccaaatactaaggacatttctctttcagaaacaaaatcactattacggtcgcagatgaga
atgaaaaatgaaagcattgtgcctccagattttatttatctaactgtcaatgctattcaa
aattctatgcaaccatcagaaactagtgctaatactgaacaaaatatactagatagaaaa
ttggacacgcgcctaaggaagaatagaccatcttcctcacctagcaagttagatccgaga
acccgaattcctgtggaacaaattgacttgtcacaattccaagacaaagaagataatgac
agtttgtctgaaatttcagaccatagatctattaaatctgcaaagtcaaaagactctatt
cctgcagcaacagacaaagaaatatatgctacaaaatgtcaggtgaaacctttgaaaaca
tcaccaaaagtaagtgtacatccgaaacgtattcgtacaactttacctaaaggtagagtt
atccgtcctatatctgcttcagtcaccaggaaggagccttatgttccagaaaagggagac
gagtccaagttaggacgaccaatcactgcccctgctctaagagttcgacctgataccgcg
tctacattaccatctcatattgctgcatcaatgcctggagtacatcctccaagacgtaaa
caacaaaacatttcaactactggttatgaagctaacattgttcctatgttgatgtaccct
gcagatatgaaagagaaactggctacattactgaaagaaaagcgtcagcacagaacagac
gagcatttggaatcagcaagtgaaatgggattaggtaaagtaagtcacttcaatgatcca
atgagatcacatgtaaagtttgagcttcgcacacacaatcaggaacgagattatataaca
gagactgagaaacactataaagagagacaaaagcgagaggaggaaatgttggaaaagaag
aaaagagtgttgtggactgccaaagctaaagggggtaaaatatcacgtgttaattctgca
cctgtaggttttagtaattga
DBGET
integrated database retrieval system
