Ruditapes philippinarum (Manila clam): 132716733
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Entry
132716733 CDS
T09557
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1-like isoform X1
KO
K20091
chromodomain-helicase-DNA-binding protein 2 [EC:5.6.2.-]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rphi03036
]
132716733
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
132716733
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
ResIII
HDA2-3
DEAD
Myb_DNA-binding
Cas_Cas6_C
Motif
Other DBs
NCBI-GeneID:
132716733
NCBI-ProteinID:
XP_060556039
LinkDB
All DBs
Position
Unknown
AA seq
1857 aa
AA seq
DB search
MSKTIDNLDITQLDFNKPLFDLTTTTSSLPSTDYQTDENYKYTPPKRKLKNDDGDDNDKS
EDSESGSGSNNSSGSGSESDSESASGNSGDGSENSGSEEKSGSGFNDSSNNEDDRHKNDS
KSDHPISAMDTDSQDSSPKKKSRGRPRKGVINDLKEFWQEDPDLYGVRRSSRARQEPTRY
NIGSDSDEEPKRRRKRTNSHRKNSGEWNSDSSSDSSASSTERFKPRRQPPTRSKRGRPGR
PGRPSKQQVRSVGRPKKKNSSDEEDFSDSEDDYTKSYKSYNKRSVSQKVRGKGRGGASTS
RVTATRRGVASKNVSYKEEDSGATDSDDIIEAPEGEEEEKEKEEENKESIEKILDHRLGK
KGASGERTTIYNIEENGDLNQILPEDTPKEVQYFIKWKNWAHIHNTWESEENLRQMKING
LKRLDNYIKKMDEINEWKKFASPEDIEYFDIQMEFNEDLYKNCLLVERIISCSLSAHSNQ
KTTNEQNGFPDYLCKWNGLPYSECTWEDGDLLSRKFQDMIDCYYQRNKSQKIPTKLSKVL
KNRPKYLPLKNQPGFIGGEEELTLRDYQLDGVNWLMHSWSKDNSIILADEMGLGKTIQTI
GFLAILYNTYQLYGPFLIVVPLSTVVAWQREFENWCPEMNVIIYLGDVNSRNIMRDYEWC
HPGNKRLKFNVLVTTYEILLKDKSFLGAVSWAELIVDEAHRLKNTDSLLYRTLMDFKSNH
RLLITGTPLQNSLKELWALLHFIMPEKFPKWSDFEDKHSRADKTGFALLHKQLEAFLIRR
VKKDVEKSLPAKTEQILRVEMSSVQRQYYKWILTKNYKELNKGLKGSCSSFVNIIMELKK
CCNHAFLVRPSETEYNQNDHLQTLIRGSGKLILLDKLLLRLREKGHRVLIFSQMVRLLDI
VSEYLQLRHFQYQRLDGSIRGDLRKSALDHFNAEGSQDFCFLLSTRAGGLGVNLATADTV
IIFDSDWNPQNDLQAQARAHRIGQKNQVSVYRLVTKNSVEEEIVERAKRKMVLDHLVIQR
MDTTGRTVLNKDSDLSSRKVPFSKHELNSILKFGAEELFKEENDDEEPQVDIDEILEQAE
TREMDENKGVRDEPLSQFKIVSFENLEDEEIETGKDWDKIIPQNDIDRVEEEERQKALLE
LNLPPRQRTTIQQLEKSLGSDDEEKNNDDDSESSESGSDDDRPKKRGRPRAGKNDSIKGF
TNAEIRRFIKSYKKYGDPLSRLIDIACDAGLRQSESDLRKLAELLKSSCEKAVKDFNAKK
QEQENPEGTGNKKGPRGISSKIASVVVNVQSILKANAELEPLVRYIPKTKTERKKFRVDF
HTKMVHWDCSWDVEEDSNLLKGIYDYGMGNWEQIKMDQELGLYDKILPDGDKKPQVKQLQ
TRADYLLRNLKKHLDGGGGNKPVGRGRKKKVKSKAEVDENMDDSDSSGKSVNDTNTSFPE
TSKKLGKKVDKSDRDAKKSESDHHDHHHHHHHHHHHRNDKKKKKRDDKKKKTKESKAGPM
HFTASAEPVAISQDGEFDGELPEEVFVECKEKMRPVKRSLKRLDNPEEGLSDRDQVIHTR
QCLLKIGDRINECLADMNDPEKIKQWRFYLWIFVSKFTEFDAKKLHKLYKHALKKRDDER
KDENSHQSKSHSHDKHHKRSHEDVKSNSYNAKRPHIEHDSSSNSNWTQSSSSNAHTSHVT
SFRNAFNNTTTSTSSPSDRWQRSSPLDRHAQDSQNVYNRNRYEGSNSSYSRGSSAQFSHH
EHTRFSDHKPHYGGDNRGFNDRREGHGSYNHRDFPPNSYAQQHSYRDGRSGDYRKFNPYR
EYGGQTRSETTNNNSYSHPPERKRRGDFNFDRDPRFRKEQRVEDYHGDSGFTGPERH
NT seq
5574 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagacaatagacaacttagacattacacaacttgattttaacaagccgttgttt
gatctgaccactacaacatcgtcgttaccgtcaacggactaccagactgatgaaaactat
aaatacacaccaccgaagaggaagttgaagaatgatgacggcgatgacaatgataaatcg
gaggattctgaatccggttcgggctcaaataattccagtggctctggttcagaatcagat
tcggaatcagcatcaggaaattctggagatggttcggaaaactctggtagtgaagaaaaa
tctggtagcggcttcaatgactcatcaaataatgaagatgacagacataaaaatgacagt
aaatcagatcatcctattagtgccatggacacagattcccaggatagtagcccgaaaaag
aaatcccgtggtcgtccaaggaaaggtgtcattaatgatctaaaagagttttggcaagaa
gatcctgatttgtatggtgtaagacgatctagtagagcacgtcaggaacctaccagatac
aacattgggagtgatagtgacgaagaaccaaaacgaagacgaaaaagaacaaatagtcat
agaaaaaattctggggaatggaacagtgatagtagtagtgatagttcagcaagttcaact
gaaagatttaaacctcgaaggcagccacctaccaggtcaaagaggggaaggccagggaga
ccgggacgccccagtaagcaacaggtacggtctgtgggtcgtccaaaaaagaaaaactcc
tctgacgaagaagatttttccgacagtgaagatgattacactaaaagttacaaatcctat
aataaaagatctgtctcacaaaaagtcaggggtaaaggtcgtggaggggcgagcacctca
agggttacagccacccgacgaggggtagctagcaaaaatgttagttataaagaggaagac
agtggagcaacagactctgatgacattattgaggctccagaaggtgaagaggaagaaaaa
gagaaggaagaagaaaacaaagaaagtatagaaaagatacttgatcatagactaggcaaa
aagggagcatcaggagagagaaccacgatatataatattgaagaaaatggtgaccttaac
caaatactgcctgaggacacacctaaagaggtgcagtactttataaaatggaagaactgg
gcacatatacataacacgtgggaatctgaggagaacctacgtcagatgaagataaatggt
ctgaaaagactcgataattatataaagaaaatggatgaaattaatgagtggaagaagttt
gcttcaccagaagatatagaatactttgatatacagatggaatttaatgaagatctctac
aaaaattgtcttcttgttgaaagaataatatcctgttcgctttcagctcattcaaaccaa
aaaaccactaatgagcaaaatggatttcccgactacctctgcaaatggaatggcctgcca
tattctgagtgcacctgggaagatggtgatctcctatccagaaagtttcaagatatgata
gattgttactaccagaggaacaagtctcagaaaatacccaccaagctttcaaaggtgttg
aagaaccgtccaaaatacctaccattaaaaaatcagcccgggtttattggtggtgaggaa
gagcttacattacgagattatcagctggatggtgttaactggttgatgcattcatggtca
aaagataacagcattatattagctgatgagatgggtttaggaaagacaattcagactata
ggttttctagctatcctctacaacacctatcagctctatggaccatttctaattgtcgta
cctttgtctacagtggttgcttggcaacgagaatttgaaaactggtgtcccgaaatgaat
gtcattatctaccttggagatgtcaacagtagaaacataatgcgagactatgagtggtgt
catcctggtaataagaggttaaagtttaatgtattggttacaacatatgaaatccttcta
aaggataagtcatttcttggtgctgttagttgggcagagctgattgtagatgaggctcat
agattgaagaacacagattcacttctgtatagaacattgatggatttcaagtcaaaccac
cgcctacttatcactggtactccactgcagaattcactgaaggaactttgggccctacta
cattttataatgccagaaaagtttcccaaatggtcagattttgaagacaaacattctcgt
gcagacaagacaggttttgctctacttcacaaacagttggaagctttcttgattagaaga
gtgaagaaagatgtagaaaaatctctccctgctaagactgagcagatcctacgtgtagag
atgtcatcagtacaaagacagtattataaatggatcttgacgaagaattataaagagtta
aacaaaggcttaaagggcagttgctcctcgtttgttaacattatcatggagttaaagaaa
tgttgcaatcatgcatttttagttcgtccaagtgagactgagtataaccaaaatgatcat
ttacagacattgattagagggagtggaaagttgattcttctagataaactgttgctacga
ctacgtgagaaaggtcatagagtgcttatcttctcccagatggtccgtctacttgatata
gtctcggagtatctccaacttcgacattttcaataccaaagactggatgggtccattcgt
ggagatttaagaaagtcagcattggatcatttcaatgctgaaggatctcaggatttttgt
tttttgctctcaacgagggctggtggtctaggtgttaatcttgccactgctgatactgtg
ataatatttgatagtgattggaaccctcagaatgatctacaagctcaggccagggcacac
aggataggacagaaaaatcaggtgtctgtataccggttagttacaaagaacagtgtagag
gaggagatagttgagagagccaaacgtaaaatggtgctggatcaccttgttatacaacgt
atggacacaacaggacgtactgtactcaataaagatagtgatctatcaagtaggaaggta
ccatttagtaaacacgagttgaactccattcttaaatttggtgctgaagaattgttcaag
gaagaaaatgatgatgaagagccacaggttgatatagatgagatattagagcaggctgaa
acacgagaaatggacgagaataaaggtgtacgtgatgagcctctgtcacagtttaagatt
gtcagctttgaaaacctggaggatgaggaaattgaaactggtaaagattgggacaagata
atacctcagaatgatatagatcgtgtagaagaagaagaaagacagaaagctttactggag
ctgaatctaccacctagacagagaaccaccatacaacagttggaaaaaagtcttggttct
gatgatgaagaaaagaacaatgatgatgattctgagagttctgaatctggcagtgatgat
gatagaccgaagaaacgtggtcgtcctcgggctggtaaaaatgatagcattaaaggattt
accaatgctgaaattagacgttttatcaaaagctacaagaaatatggtgatccactgtca
cggttaattgatattgcttgtgacgccggactaagacagtcagaatcagatttaagaaaa
ttagcagaactactcaaatcctcctgtgaaaaagctgtcaaagatttcaatgccaaaaaa
caggaacaggagaatccagaagggacaggcaacaagaaaggacctcgtggaatctcatct
aaaattgcaagtgtagttgtcaatgttcaatccatcctgaaagccaatgctgaactggaa
cccttagtcagatatatacctaaaaccaaaacagaacgtaaaaagttccgtgtagacttc
catactaagatggtacattgggactgcagttgggacgttgaggaggattcaaatcttctc
aagggcatatacgactatggtatgggaaactgggaacaaatcaagatggaccaagagctt
ggcttgtatgataagattttaccagatggggataaaaaacctcaggttaaacagttacaa
acgcgagctgattatctccttcgaaatttaaaaaaacatttagatggtgggggaggaaat
aaacctgttggtcgggggagaaaaaagaaagtgaaatcaaaggcagaagttgatgagaat
atggatgattcagattctagtggtaaaagtgtgaatgacacaaatacaagttttcccgaa
actagtaaaaaactgggtaaaaaagtagataaaagtgatagagacgctaaaaaatctgaa
tctgatcaccatgatcatcatcatcatcatcaccatcatcatcatcatcgtaatgataaa
aagaagaagaaaagggacgataaaaagaagaaaactaaggaaagtaaagctggtccgatg
cattttaccgctagtgccgaaccagttgcgatctcacaagatggagagtttgatggggaa
ctgccagaagaagtttttgttgagtgtaaggagaagatgcggccagtgaaacgttcacta
aagcgtctagataatccagaggaaggtttgtcagacagagatcaggtgatccatacacga
cagtgtttgctcaagattggtgacaggattaatgaatgtctagctgacatgaatgaccct
gagaagatcaaacaatggcgcttctatttatggatatttgtatctaagttcactgaattt
gatgcaaagaaattacacaaattgtataaacatgcattgaagaagagagatgatgaaaga
aaagatgagaattcccatcagtcaaaatcacacagtcatgataaacatcacaaacgttct
catgaagatgttaaatccaactcatacaatgccaaacggcctcatatagaacatgacagt
tccagtaacagtaattggacacagtcatcatcatcaaatgctcacacatcgcacgtcacc
tcattccgtaatgcatttaataacacaactactagcacatccagcccgtcagatagatgg
caaagatcaagtccactagatagacatgcccaggactcgcaaaatgtttacaatagaaac
agatatgaaggaagcaacagctcgtattcacgtggaagttcggcacaattctctcatcac
gaacatacacgtttttctgatcacaaacctcactatggtggtgacaatagagggtttaat
gatagacgtgaaggccatggcagttacaatcaccgtgattttccgcccaattcttatgct
caacagcatagttatcgggacgggcgcagtggggactacagaaaatttaacccctataga
gaatatggagggcagacccggtctgaaactaccaataataacagctattcccacccacca
gaacgtaaaagaaggggagacttcaattttgaccgagatccaagattccggaaagaacag
agagttgaagattatcatggtgatagtggctttactggaccggaacgccactga
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integrated database retrieval system
