Ruditapes philippinarum (Manila clam): 132717168
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Entry
132717168 CDS
T09557
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog isoform X1
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
132717168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rphi03009
]
132717168
Ribosome biogenesis [BR:
rphi03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
132717168
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_Prp19
WD40
WDR55
Beta-prop_EML
ANAPC4_WD40
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_TEP1_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_NWD2_C
Beta-prop_EIPR1
Motif
Other DBs
NCBI-GeneID:
132717168
NCBI-ProteinID:
XP_060556573
LinkDB
All DBs
Position
Unknown
AA seq
696 aa
AA seq
DB search
MPLHVFMVAECENTAKMGEFRVHHVRFFEWTPKSIQCMSYNSSKQRLALSRCDGSLELWS
IKDGWYQEEIIPGIEDQSIEDLVWQGTRLFTAGLDGHIREIDLVKLNTKKSCHSNAGPVW
CLASNSAGTRLAAGTEDGCVVLLDTEYNVLEYLTRFDSQDSRILCISWHSGEDLIVTGGI
DNIRIWSVSSGKAMQRLTVARTDKNKETVIWSVICLSDMTIVSGDSRGKTSFWNGRQGTL
IKSIQSHKADVYCLAVDSTENIVVSSGIDSSVVQFNYIAARENSDWRDWVGTLVHNQHTH
DVRAIQIINKYVVTGGVDTNLIQFNLSSIGSDVGHKRHSSENKWKRITPVPQKSLVKVAG
DVNVILLQYTYHIEVWRLGFTQNTGNNGDILPLRSNPIKLIQLKTKGGVPIFCSSITQDA
SFMSYSDCDTLRFYSITLENLTDIQPGVSMKKITPATDSPPDGAHCMCFTSDKTRLVTVT
SSSCVQICSIQPASISVEHTFPQLSESLHLLDVSKDDQFAAVADHDCNVHVYNLNSIQHV
CSVPRQGHQVSALSFSPDSKMVVMAYTNQKIFEFDVNQMEFSDWTKKHSQSFMNAWLKRK
SKITKISYNPNNHNQLFLHDEQLFCILDKTQNFPHIKRSFEELKLEKTTAFHICMKYKFL
FHLEVLPDNWLVAVERPQLDLYSSLPEALKRKKFGT
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgcctctacacgtatttatggtagctgaatgtgagaacactgcaaaaatgggtgaattc
cgagttcatcatgttagattctttgagtggacaccgaaatcaatacaatgtatgtcatac
aattcatcaaagcaaagattggctttatcaagatgtgatggaagtcttgaactatggagt
ataaaggacggctggtaccaggaggagattattcctggcatagaggatcagtctatagaa
gatctggtgtggcagggaaccagattgttcacagctggccttgatggtcatatcagagaa
atagatcttgtcaaactaaatacaaagaaatcttgtcattcaaatgctggaccagtttgg
tgtttggcttccaattctgctggaaccaggcttgcggctggtacagaagatggatgtgtt
gtgttgttggatacagaatataatgttctagaatacctgaccaggtttgactctcaggac
agtcgtatattatgtatatcttggcattctggagaagatctaatcgtgacaggtggaatt
gataacatcagaatatggagtgtatcgtcaggtaaagccatgcagcgcctcacggtggca
agaactgacaagaataaagaaacagtcatctggtctgtgatctgtttaagtgatatgaca
attgtgagtggagattcacgaggaaaaacaagtttttggaatggacgacagggcacattg
ataaagagtatacagagtcacaaagcagatgtatattgcctggcggtggattcgactgag
aatattgtggtgtcttcaggtatagactcaagtgtcgtgcagttcaactatatagctgca
cgtgaaaacagtgactggcgggattgggtgggaacattagttcacaatcaacatacacat
gatgttcgagctatacaaattataaacaaatatgtagtgacaggaggtgtagatacaaat
ttgatacagtttaatttgtcaagtattggtagtgatgtaggacataaaagacattcatca
gaaaacaaatggaagcgtataactcctgtcccacagaaatcactagttaaagttgcggga
gatgtgaatgtaatacttttacagtacacttaccatatagaggtttggagattaggattt
acacaaaatactggtaataatggtgatattcttccattgagatcaaaccctatcaaactc
attcaattgaagacaaaaggtggtgtgcctatcttctgcagcagtattacccaggatgca
tcatttatgtcatactctgattgtgacacactgagattttacagtatcaccttggagaac
ttgacggatatacagcctggtgtaagtatgaagaaaatcactcccgctacagacagtcca
ccagatggcgctcattgtatgtgcttcacctcggataagacacgtcttgtcaccgtaacg
tcctcatcatgcgtacagatctgctccattcagccagcctcaatatccgtggagcataca
tttccacagctgtctgaaagtctacatttgttagatgtgagtaaggatgaccagtttgca
gctgttgccgatcatgattgcaacgtgcatgtttacaatctcaattctatacagcatgta
tgtagtgtacctagacaaggtcatcaggtgtcggcactcagtttcagtcccgacagtaag
atggtagtaatggcatacaccaatcaaaagatatttgaattcgatgtaaaccaaatggag
ttttctgattggacgaagaaacacagtcaaagtttcatgaatgcatggttaaaaagaaaa
tcaaagatcacaaagatctcttacaacccaaacaatcacaatcagctgtttttacatgat
gaacagctgttttgtatactagataaaactcagaactttccacacatcaaaagaagcttt
gaagagttgaaactggagaagaccacagcctttcatatttgtatgaaatataagtttttg
tttcacctggaagttttacccgacaactggcttgtggcggtagagagaccacagttagat
ttgtacagttcactacctgaagccttgaaaagaaagaaatttggaacttga
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