Ruditapes philippinarum (Manila clam): 132718274
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Entry
132718274 CDS
T09557
Name
(RefSeq) regulator of nonsense transcripts 3B-like
KO
K14328
regulator of nonsense transcripts 3
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03013
Nucleocytoplasmic transport
rphi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132718274
03015 mRNA surveillance pathway
132718274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132718274
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
132718274
mRNA cycle factors
P-body specific factors
132718274
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
132718274
NCBI-ProteinID:
XP_060557939
LinkDB
All DBs
Position
Unknown
AA seq
567 aa
AA seq
DB search
MTQETDNRVKVVDKRRPKDLPPTKVVVRRLPPSLTGETFLEQVSPLPNYDFFYFMKADLS
LGVNAFSRAYINFQNYEDIANFRDKFDGYIFVDAKGNEYPAIVEFSSFQKVPKKKMRKPD
SKKGTIEQDPDYLKFVDTLNNPETEEVVSLDTYLEQLEAKEREAKATKGGPKVTTPLIEF
IKKRREEKRNSILRAREERKKRELERKQMREDDRRKRKEREIEREKDRQRQKERDRDRGR
DREKDKEKQEEKNKDGPVKLLKNTERDTDPEDSKDNKTDSDKPDNKTNDKSSSDKSEKLS
DRVSDQKKEKEGVGPEKDNSRSKDDKSKLRFSKENREKQREQREVRDRRDDRDRGKSSPA
KNDRPRSSRDDPRDRDDRRSDRPRPKSYREDRERRLNRDQDYYRDDRRQSGPPRRDGRYR
DDYRDSNRNNNNSRDSPKSSGGGGPRSDRPSSKYDAREKKPEKEPARSETPEKTSKPAKP
EGDGKPSSADTGKAVKDKDKESVKPERERTKPNEEGKSQNNNNTDAPRDSESSAALDRRK
RKDRPERKTQKKLGSPLFGSVAKVLMH
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgacacaagaaaccgacaatagagtaaaagtagttgacaagcgacgcccaaaagacttg
ccaccaacaaaggttgttgtaagaagattaccaccatcattgactggtgaaacattttta
gagcaagtgtcacctctacctaactatgatttcttctattttatgaaagctgatttaagc
cttggtgttaatgccttttctcgagcatatataaactttcagaactatgaggatattgcg
aattttcgagacaaatttgatggatatatttttgtggatgccaaaggaaatgaatatcca
gctatagtagaattttcgtcattccaaaaagtgccaaagaagaaaatgaggaaacctgat
tccaaaaaaggcacaatagaacaagacccggactatttgaagtttgtagacacattgaat
aacccagaaactgaagaggtagtatctcttgacacctacctcgagcaactggaggctaaa
gaacgtgaggctaaagcaaccaaaggtggacctaaagttactacaccattgatagaattt
ataaagaaaagaagagaagaaaagagaaattctattttgcgtgcaagagaagaacgtaaa
aaacgtgaactagagaggaaacagatgcgagaagacgatagaagaaaacgcaaagagcgt
gaaattgagagagagaaagacagacagcgacagaaggagagggacagagatcgtggcagg
gatagagagaaggataaagagaaacaagaagagaagaataaggatggtccagtaaagctt
ttaaaaaacacagaaagagatactgatcccgaggacagcaaagacaataagactgacagt
gataaaccagataataaaacaaatgataaatcatctagtgataaatctgaaaagttaagt
gacagagtaagtgaccagaaaaaagagaaagagggtgttggacctgaaaaggataatagt
agatctaaggatgataaatcgaagctacggttctcgaaggagaacagagagaagcagagg
gaacaaagagaagtgagagaccgacgtgatgacagggatcgtggcaaatctagtccagct
aagaatgaccgtccaagatctagccgagatgatcctagggacagagatgaccgacggtct
gacagaccgaggccaaagtcatacagggaggacagagaaagacggttaaacagagatcaa
gattattacagggatgacagaagacaaagtggaccacctagaagagatgggagataccgg
gatgactacagggatagtaacagaaataataataacagtagagattctccaaaatctagt
ggcggaggtggtcctagatctgacagaccaagcagtaaatatgatgcaagggagaaaaag
ccggagaaagaaccggctaggtctgaaacccctgagaaaacttctaaacctgcaaagcct
gagggagatggtaagcctagttcagcagatacaggaaaagctgttaaagacaaagataag
gagagtgttaaaccggagagagaaagaacaaagcctaatgaagagggtaaatcacagaac
aataacaatacagacgcacctagagacagtgaatcatcagctgcattggatagacggaag
agaaaggatcgtccagagagaaaaactcaaaaaaagttgggttccccgctgtttgggagt
gttgccaaagttttaatgcattaa
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