Ruditapes philippinarum (Manila clam): 132719049
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Entry
132719049 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: clathrin heavy chain 1-like
KO
K04646
clathrin heavy chain
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi04142
Lysosome
rphi04144
Endocytosis
rphi05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
132719049
04142 Lysosome
132719049
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
132719049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rphi04131
]
132719049
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rphi04147
]
132719049
Membrane trafficking [BR:
rphi04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
132719049
Exosome [BR:
rphi04147
]
Exosomal proteins
Proteins found in most exosomes
132719049
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
132719049
NCBI-ProteinID:
XP_060558773
LinkDB
All DBs
Position
Unknown
AA seq
1692 aa
AA seq
DB search
MSQMLPIRFQEHLQLQNVGINAANIGFSSLTMESDKFICVREKVGDTAQVVIIDMNDSSN
PIRRPISADSAIMNPASKVIALKGSAQPGDPNAGKTLQIFNIEMKSKMKAHTMTEDVLFW
KWISVNTVAIATETAVFHWSMEGDSQPQKMFERHSNLTGCQIINYRTDAKQQWLLLVGIS
AQQNRVVGAMQLYSVERKVSQPIEGHAAAFASIKLEGNATPSTLFCFGVRGAQGGKLHII
EVGQPATGNTPFQKKAVDVFFPPEAQNDFPVAMQVSQKHGVIFLITKYGYVHLYDIESAT
CIYMNRISGDTIFVTASHEATSGIIGVNRKGQVLSVSVEEDNIVQYIANTLQNPDLAIKV
ASRSNLPGAEDLFVKKFNMLFQSGQYSEAAKAAASAPKGILRTPATIQQFQQVPAQPGQT
SPLLQYFGILLDKGQLNKYESLELCRPVLQQGRKQLLEKWLKEEKLECSEELGDLVKSAD
PTLALSVYLRANVPNKVIQCFAETGQFQKIVLYAKKVGHTPDYIFLLRNIMRMNPEQGLQ
FAQMLVQDDEPLADLNQVVDVFMEFNLIQQCTSFLLDALKNNRPSEAPLQTRLLEMNLMS
APQVADAILGNQMFTHYDKAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWL
VNYFGSLSVEDSLECLKAMLSANIRQNLQVCVQIASKYHEQLTTNSLIELFESFKSFEGL
FYFLGSIVNFSQDSDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQ
LPLIIVCDRFDLVHDLVLYLYRNSLQKYIEIYVQKVNPSRLPIVIGGLLDVDCSEDVIKQ
LILVVKGQFSTDELVAEVEKRNRLKLLLPWLEMRSHEGVNEPATHNALAKIYIDSNNNPE
RFLKENQYYDSKVVGKYCEKRDPHLACVAYERGQCDMELIKVCNENSLFKSEARYLVRRR
DPDLWAVVLQEDNEYRRQLIDQVVQTALSETQDPEDISVSVKAFMTADLPNELIELLEKI
VLDSSVFSEHRNLQNLLILTAIKADRSRVMEYINRLDNYDAPDIANIAITNELYEEAFAI
FKKFEVNTSAIQVLIEHVNNLDRAYEFAERCNDPAVWSQLGRAQLNGGLVKEAIDSFIKA
DDPTQYMEVVNVASSSDNWEDLVKYLQMARKKARETFIETELVYAFAKTNRLADLEEFIS
GPNHANITQVADRCFDDKMYEAAKLLYNNVSNYARLAITLVHLGEYQGAVDGARKANSTR
TWKEVCFACVNNEEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELILLLEAALGLER
AHMGMFTELAILYSKFKPGKMREHLELFWSRVNIPKVLRAAEQAHLWPELVFLYDKYEEY
DNAILTMMNHPTEAWRESQFKDIITKVANIELYYKAIQFYLDFKPLLLNDLLMVLTPRLD
HTRSVTFFDRVNQIPLVKPYLRAVQKNNNKAINEALNNLFILEEDYQGLRASIDAYDNFD
NITLAQRLERHELIEFRRIAAYLYKGNNRWKQSVDLCKKDKLFKDAMLYAGESRNIDIAE
DLIAWFLENKYHECFAACLFQCYDLLRPDVILELSWRHNIMDFAMPYMIQVIREYISKVD
KLEQSENVRTEEEEKAVEQPIVFAEPQLMLTAGPQMMAAPPQGVYGQQPGYGMPPGGMPA
GGMPQQPYGYNM
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaaatgctcccgatacgttttcaggagcatctgcagctccaaaatgtgggaatc
aatgcagcaaacattgggtttagttcccttaccatggaatctgacaagtttatttgtgta
cgagagaaggttggagatacagcgcaagttgtcatcattgacatgaatgattcgtcaaac
ccaatcagacgtccaatttcagctgactcggcaatcatgaaccctgccagtaaagttata
gccctgaaagggtcagcacagcctggggatcctaatgctggcaagacattgcagattttc
aacattgaaatgaaaagtaaaatgaaggctcacacaatgacagaagatgtcttgttctgg
aagtggatttctgtaaacactgttgccatagcaaccgagacagctgtcttccactggtct
atggaaggtgattcgcaaccacagaaaatgtttgaacgtcactctaacttgacaggttgc
caaattatcaactatcgtacagatgccaaacaacagtggcttctgcttgtaggaatatca
gcgcagcaaaaccgtgtagttggtgctatgcagttgtactctgtggaaagaaaagttagt
cagccaattgaaggtcacgcagcagcattcgcatcaatcaaactagagggtaatgccaca
ccatccacactcttctgttttggtgttcgaggtgcacaagggggcaagctgcatataatt
gaagtaggtcaaccagcaacaggcaacacaccattccagaagaaagctgtagatgtattc
ttcccaccagaggctcagaatgacttccctgttgctatgcaggtgagccagaaacatggt
gtaatattcttgatcacaaagtacggctatgtccacttgtatgacatcgagagtgctaca
tgtatatacatgaacaggatcagtggtgatacgatctttgtcactgcgtcccatgaagcc
acgtcaggaattatcggagttaacaggaaagggcaggtgttgtcagtgagtgttgaggag
gataacattgtgcagtacattgcaaacaccctgcagaatccagacttggcaatcaaagta
gcatcacgctcaaacctgccaggagcagaagacctgtttgtgaagaagttcaacatgctg
ttccagagtggacagtacagtgaggccgccaaggcagctgctagtgcacccaagggtatt
ttgagaaccccagccaccattcagcagttccaacaagtaccagcccagcctggtcagacg
tccccactcctgcagtacttcggtatcttgctggacaaaggtcagctgaacaagtatgaa
tccctcgagctgtgtagaccagttctccaacaaggcaggaaacaactccttgaaaaatgg
ctgaaagaagaaaagctggagtgtagtgaagaactgggagatttggtgaaaagtgcagac
cccaccttggcattatctgtatacctcagagctaatgtaccaaacaaggtgatccaatgt
ttcgcggaaacaggacagttccagaagattgtactgtatgcgaagaaagttggtcatacc
ccagattacatattccttctacgtaacataatgaggatgaaccccgagcagggcctccag
tttgcccagatgcttgtacaagatgatgagccacttgctgatcttaaccaggtagtggat
gtgtttatggagtttaacttgatccagcaatgcacatcattccttcttgatgccctgaag
aacaacagaccatctgaggcccctcttcagaccaggcttctagaaatgaaccttatgtca
gccccacaggtagccgatgctattctaggtaaccagatgttcactcactatgacaaggca
cacatcgctcagctctgtgagaaagctggtcttctacagagggccttggagcactacaca
gacctgtatgacataaagagagcagttgtacatacacatcttcttaacccagagtggcta
gtaaactattttggttcactgtctgtagaagattctctagaatgtttgaaggctatgtta
tcagctaacatccgtcagaacctgcaagtgtgtgtacagatagcatctaaataccatgaa
caactcaccactaactctctcattgaattgtttgagtcattcaagagctttgaaggtctc
ttctatttccttggatctatagttaacttcagtcaggattcagatgtacatttcaagtat
attcaggctgcgtgtaaaaccgggcagattaaagaagtggagagaatttgtcgtgagagc
aattgttatgacccagagagagtgaaaaacttccttaaggaggctaaattgactgaccaa
ctgccactgatcatcgtgtgtgacagatttgacctggtgcatgaccttgttctatacttg
tacagaaatagtctacaaaaatacattgaaatctatgtacaaaaggtgaatccatcccgt
ttacctattgttattggtggtctgttggatgtagattgctcggaagatgtcatcaagcaa
cttatcttggttgtgaaaggtcagttctccactgacgaacttgttgccgaggtggagaag
aggaacagactcaaacttctactgccctggttggagatgcgctcacacgagggtgtcaat
gaaccagccactcacaatgctctagccaaaatctacattgacagtaacaacaacccagaa
agattcctcaaagagaaccaatactatgacagtaaagttgtaggtaaatattgtgagaag
agagacccacatcttgcttgtgtagcttatgaacgtggacagtgtgacatggaacttatc
aaggtgtgcaatgagaattcattgttcaagagtgaagctagatacctcgtgagaagacgc
gacccagatctctgggcggtcgtcctacaggaagacaatgagtacagacgtcagctgatt
gaccaggttgtgcagaccgctctgtccgagacccaggaccccgaggacatctctgtgtca
gtgaaagctttcatgaccgctgacctaccaaacgagcttattgaacttctggagaagatt
gtcctggatagctcagtcttcagtgaacacagaaacttgcagaacttgttgatcctgaca
gccatcaaggcagacagaagtcgtgtgatggagtatattaacagattagataactacgat
gcaccagacatagctaacatcgccatcactaatgaactgtacgaggaagcatttgccatc
ttcaagaagtttgaagtcaatacttcagctattcaggtacttattgagcatgtgaacaat
ttggacagagcttacgagtttgcagagagatgtaacgaccctgcagtatggagccagctt
ggtcgcgctcagttgaacggaggtcttgttaaggaagctattgactcgttcatcaaggct
gatgacccgacacagtacatggaggttgtcaatgtagcaagtagtagtgacaactgggag
gaccttgtcaagtatttacagatggcccgtaagaaggccagagagacattcattgaaaca
gaattggtgtatgcttttgccaaaaccaaccgacttgctgacctggaagaatttatttct
ggaccaaaccatgctaacattacacaggtggctgaccgttgttttgatgacaagatgtac
gaggctgctaaactactgtacaacaatgtatctaattacgctcgtctcgctataactcta
gtccacttgggagaataccagggagccgtagatggtgctcgtaaagccaacagcacaaga
acatggaaagaggtgtgttttgcgtgtgtgaacaatgaggaattccgtctagcacagatg
tgtggtctacatatagtggttcacgctgatgagctcgaggaactgatcaattactaccag
gataggggttactttgaggaactcattttattactagaggcagcattaggattagaaaga
gcacatatgggcatgtttacagaattagccattttatactccaaatttaaaccaggaaag
atgagagaacatttagaactattctggtcgagagtaaacattccaaaggtccttagagct
gctgaacaggcacatttgtggccagaactcgttttcttgtacgacaagtacgaggaatat
gacaatgccattctgaccatgatgaatcatccgacagaagcctggcgcgagagtcagttc
aaggatatcattacaaaggtggcgaatattgagttgtactacaaggccattcagttctac
ctggatttcaaaccacttcttctgaacgacctcctgatggtcctcacccctcgtctagat
catactcgttctgttaccttctttgatcgcgtcaaccagattcctctagttaaaccatac
ttacgggctgtgcaaaagaacaacaacaaggccattaatgaggccctgaacaatctattc
attttagaagaagattatcaaggtctacgcgcgtccatcgacgcgtacgataattttgat
aatataacgttggcccagaggctggagaggcacgagttaatagagttccgtagaatagca
gcttatctttacaaaggcaacaatagatggaaacaatcagtggacctatgcaaaaaggat
aaactctttaaggatgcaatgttatatgctggagagtctagaaatatagatatagcggag
gatttgatagcctggtttttagagaacaaataccacgagtgttttgctgcgtgtctattc
caatgttacgacctgctccgaccagacgtcatcttagagctgtcctggagacacaatatc
atggactttgccatgccctacatgatacaagttataagagaatatattagcaaggttgac
aaactagaacagtcagagaatgtcaggacagaagaagaggaaaaagcagtggaacaacct
attgtatttgcggagccacagttgatgttaactgctggaccacaaatgatggctgcccca
ccgcagggagtgtatggtcagcaaccaggatatggaatgccacctggtggaatgccagct
ggtggcatgccacaacaaccttacggatataacatgtaa
DBGET
integrated database retrieval system
