Ruditapes philippinarum (Manila clam): 132719649
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Entry
132719649 CDS
T09557
Name
(RefSeq) sex-determining region Y protein-like isoform X1
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
132719649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rphi03000
]
132719649
Transcription factors [BR:
rphi03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
132719649
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
132719649
NCBI-ProteinID:
XP_060559438
LinkDB
All DBs
Position
Unknown
AA seq
456 aa
AA seq
DB search
MDGNVIPGYTTSTPHEQQTNSFMTHSSGYNYQQWIPSVAYPATMREHIAMNIPKKEQRIR
RPMNAFMVWAKTARKRLADENPDVHNAELSKMLGTNWKNLPADEKRRYIDEAERIRQDHM
KQYPDYKYRPRRRKGTKKANNNPNTSLPTEHSSGSLAYDRASSCSPHYSMGRFPRSNSFS
YSDFPNRQSENEFQRLSSSVPISATRLSVSPESLPPSSPEEASHDNVAYAGHCSFSHYQA
TGMNSYEQSRQFSDSQVLGRNYEYSKTYTPHTMISQQIPKPQNVGIKVDHNDNYWKSFNN
TVVKSEMYASDMSLQQGNLVRTSQGFTYGNYAENVKSQFYDQNEEQFDDVIDIKPEEMEI
YINPNNRLDLNRNAIERCLPALSARADLGNVKYREIKREYQDVHDENDYKNENTAVYDEA
SSMVHESEQCRDIPVVCYDFEFDAQPMINAITNKTG
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggatggaaatgttattccaggttataccacatccacgcctcacgaacagcagacgaac
tcctttatgacgcattctagtgggtacaattaccagcagtggataccctcagtggcatat
ccggcaaccatgagagagcacattgccatgaatattccgaagaaggagcagcgtattcga
cgacctatgaacgcgttcatggtctgggcaaaaacggcgcgaaaacggctagcagacgag
aatccagacgtgcataatgcagagctgagtaaaatgttaggcactaattggaagaatttg
ccagcagacgagaagagacgatatatagacgaagcggagaggatcagacaggatcatatg
aaacaatatcccgactataaataccgtccacgccgacggaagggcacaaaaaaggccaac
aataacccaaacacatctctaccaactgaacattcttcaggctctttagcgtacgacagg
gcatccagttgcagccctcactattcaatggggagattcccaagatcgaacagttttagc
tacagtgattttccaaacagacaatccgagaacgagtttcagcggctgagctccagcgtg
cctataagtgctactcgcctttctgtatctccagagtcacttccgccaagcagcccggag
gaggcaagccatgacaacgtcgcatacgcaggtcattgttcattcagtcattatcaggcg
actggaatgaattcttacgaacaatctcgccagttttctgactctcaagtgctgggtcgg
aactatgaatattctaaaacgtacactccccacacaatgatctctcaacaaataccaaaa
ccacaaaacgtcgggattaaagttgatcataatgacaattactggaaaagtttcaacaac
acggtggtaaaatcagaaatgtatgcttctgacatgtctttgcagcagggcaatttggtc
cgcacgtctcagggttttacgtacggcaattacgctgaaaacgtaaaatctcaattttac
gatcagaatgaagagcagtttgatgacgtgatcgatatcaaaccggaagaaatggaaata
tacatcaacccaaacaatcggctggatctgaacaggaacgccattgaaagatgccttccc
gctctttctgctcgtgccgatttaggtaacgttaagtaccgtgagattaaacgcgaatac
caagacgttcatgatgaaaatgactacaaaaatgaaaatactgctgtttatgatgaagcg
tcatcgatggttcacgagtcggagcagtgcagagatattccagtagtatgttatgatttt
gaatttgatgcacaaccaatgataaacgccattacgaataaaaccgggtaa
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