Ruditapes philippinarum (Manila clam): 132719895 Help Entry 132719895         CDS       T09557                                  Name (RefSeq) symplekin-like isoform X1   KO K06100   symplekin Organism rphi  Ruditapes philippinarum (Manila clam) Pathway rphi03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:rphi00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     132719895  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:rphi03021]     132719895    03019 Messenger RNA biogenesis [BR:rphi03019]     132719895 Transcription machinery [BR:rphi03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      132719895 Messenger RNA biogenesis [BR:rphi03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      132719895     U7-dependent histone pre-mRNA processing factors      132719895 SSDB OrthologParalogGFIT Motif Pfam:  Symplekin_C SYMPK_PTA1_N Adaptin_N HEAT_2 HEAT HEAT_EZ zf-CCCH zf-CCCH_4 HEAT_GCN1 Kunitz_BPTI INTS1_R4 Motif Other DBs NCBI-GeneID:  132719895 NCBI-ProteinID:  XP_060559830 LinkDB All DBs Position Unknown AA seq 1404 aa AA seqDB search MADTRRSAAAQFFTEEGDPDAGPSVGSVYDKVVDLLNQASLMSKDAQKVGNLKQVQELII HKDSNLLDNFFDEMIAFQSDRSVDVRKYVVGFMEEACKKDPELLTKIMPCLQHLLNDENV NVQKRVILTLSSIYKTLIMWLAKSKHPTPEMTQVWDIMAMMKKSLYDMLDSENDGIRTHA VKFSEGIILTLSRKTSDSEVPKIRGENVTLDSIPESSKYLKVHKLEEEGKKMFDALLQFQ ASPHISSINLMTVMSSLCNIAKQRPAFFGRVVQAFETLHVNLPPTLAKSQVSSVRKNLKM QMLSLLKHKCAVDYLPNITTLLTDLGATQSEVLKVMPKIDESKKRKRQEAESSTKKIRIE RDDDDDDDIGMTPWTDRATDQKLANVNLRQTAIDITADDLAPRLNANNVADLVLISMVML PDTMPAHFQATYTPIAAAGTDGQVSHMARLLATQLTMAGMGKGVAEVQREAAEKKTSPFD GSETPAFQGTSPKQLISTVVGGQSATSKLDIINKAMLPPPPLFPSKRVVKHFKLSAVTRP LEENESEELSLMALDRVLASEKKATMGNALHARTKILSCLVTQFGGEFKDIIQNYIFSDL RNRIELAFAWLYQEYANCMNFMSTSVEGNKHNMSSYDECLTRILNSLIEVVDQKEMLFHR VLLEAPAVTDNALYILRRFCVDDTRVESGLETLKKLIMTRPAHRLRFLDVLLEFTSSDHT ELRNQAITYTKNLYETQQAHHAIEYYAVQMLKYLLLPKPSPELYAKLRGRQEAPETWNDD AIKMSLYLYLGLLPCNHKLIHELATVYTSTNADIKRTILRMLEAPVKGMGMDSPELLLFV ENCPKGAETLVTRVIHILTDKAAPSPELVERVRDLYHKRVPDVRFLIPVLIGLNKDEVVA ALPKLIKLNPVVVKEVFNRLLGGHGDVAYQSPLTPAELLIALHNLDDKVDMKTTIKATNL CFGEKKIYTQEVLALVMQNLMERSPLPTLFMRTVLQALSMYPRLLGLVLNILQRLILKQV WKQKKVWEGFVRCCQRTKPQSFQVLLQLPADQLKDVFQICQELQEPLLNHVNKLTDTQRS HLSPAIIQVLETDPMIEKREAEARAAQEAKEERLRKEAEEMMRIRREAEARAAQKDREIA DKSENDRRKDKRRDERARSRERSRSRERERPSKENRVPAKTDVVDPSEPVFIKHGGAGDP SEPPRDRRESRGERRESRDTRMAALNPEPGDSVDLSDLPPVPRRRNTDILRNPSPQLRNP SPGHRNPSPHGEAMDVDITAVKSEPEDKGYEDEMSTTKVEKSKSDPGVLKNGVERKQITK SDTENCKRQIITPDKEDGKGQITQIDKEDGKEKKVSESKRGKDRKICKYFKHGQKCWRGT KCKLAHSKEHGQQAMERFEVDQQQ NT seq 4215 nt NT seq  +upstreamnt  +downstreamnt atggcggacacgaggcggtctgccgctgcacagtttttcacggaggagggagatcctgat gcgggaccttctgttggttccgtttatgataaagttgttgatttattgaatcaagcatct ttgatgtctaaagatgcacaaaaagttggcaatttgaagcaggtacaagagttgattatt cacaaagattctaatctgctggacaacttctttgatgaaatgatagcatttcaaagtgat agatctgtagatgtaaggaagtatgtagtaggatttatggaagaagcttgtaagaaagat ccagaactattaacaaaaataatgccatgtctgcaacatttgttgaatgatgaaaatgtc aatgtacagaagagagtcatcctcactctgtccagtatctataaaacactaatcatgtgg ttagcaaaaagtaaacatccgaccccggagatgacccaggtgtgggatatcatggccatg atgaagaaatcactatatgatatgctggattctgaaaatgatggtataagaacacatgcg gtgaagttttctgaagggatcattttgacattatctaggaaaacctcagattccgaggta ccaaagatccgcggagaaaatgtaaccttagatagtatacctgaatcaagtaaatatctg aaagttcataaactagaagaggaaggaaagaaaatgtttgatgctctacttcagttccag gcttcaccacacatttctagtataaatttgatgactgttatgagcagtttatgtaatatt gccaaacagagaccagctttctttggtagagttgtacaggcatttgaaacattacatgtg aatcttccaccaacattggctaagtcacaagtaagcagtgttcgtaagaatctcaagatg cagatgttgtctctgctcaaacacaagtgtgctgtagattatctacctaatataacaaca ctacttactgatcttggggccactcaatctgaggtattaaaagttatgccaaaaatagat gagtccaagaaaaggaagagacaagaagctgaatcttcaacgaagaaaataagaatagaa agggatgatgatgatgatgatgatataggaatgacaccatggactgatcgtgccactgac cagaaactagctaatgtaaatttgagacagactgctatagatataacagcagatgatttg gctccgagacttaatgctaacaacgtggcagatctagtccttataagcatggtaatgtta ccagacacgatgcctgcccacttccaggctacctatacccctatagcagctgctggtaca gatggtcaggtcagtcacatggccaggctactagctacacagctcactatggctggcatg ggaaaaggtgtggcagaagtacaaagagaggctgctgagaagaaaacctcaccatttgat ggcagtgagacaccagcattccagggaacgtccccaaaacaactcatttctaccgttgtt ggtggtcaaagtgcaacatctaagctagatattattaacaaagccatgttaccaccacca cctttgtttccttccaagcgtgttgtaaaacattttaagttatcagctgtgactagacca ttagaagagaatgagtccgaggagttatctttgatggcactggatagagttttagcttct gaaaagaaagcaacaatggggaatgcattgcatgctcgcaccaaaattttatcatgtctt gttacccagtttggaggcgagtttaaagacattatacagaactacattttctcagattta cgtaacagaatagaactagcatttgcatggttatatcaggaatatgctaactgtatgaac tttatgtcaacatcagtggagggtaacaaacataacatgtccagttatgatgaatgtctc actagaatattaaacagtcttatagaggttgttgatcagaaggagatgttatttcaccga gttttacttgaagccccagctgtaacagataatgccctatatattcttagaagattttgt gttgatgatacacgtgtagaatcaggtttagaaacattgaaaaaattgataatgacacga ccagcccataggttacgattcctggatgttttactggagttcacatctagtgatcacaca gagctgcgaaatcaggccataacatataccaagaatttgtatgaaacacaacaggcacat catgctattgagtattatgctgttcagatgttgaaatatttattgttaccaaaaccatct ccagaattatatgctaaactgaggggaaggcaagaagccccagagacatggaatgatgat gccataaagatgtctttatacttgtacctaggtctacttccatgtaaccataaactgatt catgagttagcaacagtttatacttccacaaatgcagatatcaaaagaacaatattaaga atgttagaagctcctgtgaagggtatgggaatggattctccagagttgttgttgtttgtg gagaactgtcctaaaggagcagaaacactagtcaccagggttatacatatacttactgat aaagctgccccatctccggagcttgttgaacgtgttcgtgacctgtaccataaacgtgta cctgatgtacgcttcctcatacctgtactgattggacttaacaaggatgaagtggttgca gcgttacctaaactgatcaaattaaatcctgtggttgtaaaagaagtcttcaatagatta ctgggaggacatggagatgtggcctaccaatcacctttgactcctgcagaactacttata gccctgcataatttagatgataaagttgacatgaaaacaactataaaagcaaccaatcta tgttttggagagaagaagatctacactcaggaagtcctggctctggtcatgcagaatcta atggaaagatcaccactccctacattattcatgagaactgttttacaagcattgtccatg tacccaaggttgcttggattggttctcaatatattacaaaggttgattttaaagcaggta tggaaacagaagaaggtatgggaaggatttgtaagatgttgtcagagaacaaaaccacag tcatttcaggtattgttacagttaccagcagaccagctgaaagatgtgttccagatatgt caagagttacaggaacctctactcaaccatgtcaacaaactcactgatacacagagatct cacctttccccagctatcatacaggtgttagagactgaccctatgatagagaaacgtgag gctgaggccagggctgctcaggaagcgaaggaggagagattgaggaaagaggcagaggaa atgatgaggatcagaagggaagctgaggcgagggcagcgcaaaaagaccgggaaattgct gataaatctgaaaatgataggagaaaagacaaaagaagagatgaaagagcacgttcaaga gaacgatcaaggagtagagaaagggagagaccttctaaggaaaacagggtaccagctaaa acagatgttgtagatccgagtgagccagtatttataaaacatggaggtgctggggatccg tcagaaccgccacgtgacagaagagaaagtagaggcgaaagacgtgaatctcgagatacc aggatggccgctttgaatccggagccaggggattctgttgatctctcagatttacctcct gtaccaaggaggagaaacactgatatattaaggaacccatcacctcagttacgtaaccca tcacctggacacagaaacccttcaccgcatggtgaagccatggatgtagatataacggca gtgaaatcagagccagaggataaaggatatgaggatgaaatgtctaccaccaaggttgag aagagtaaaagtgacccaggagtactgaaaaatggggttgaacgtaaacagataaccaag tcagatacagaaaattgtaagaggcagattattacaccagataaagaagatggtaaaggg cagataactcagatagataaagaagatggtaaagagaaaaaagtcagtgaaagtaaaaga ggaaaagacaggaagatatgcaagtatttcaaacatggtcaaaaatgctggaggggtacc aagtgcaaattggctcattcaaaagaacatgggcagcaagcgatggagagatttgaagtc gatcagcagcagtaa

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