Ruditapes philippinarum (Manila clam): 132720153
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Entry
132720153 CDS
T09557
Name
(RefSeq) E3 ubiquitin-protein ligase NEDD4-like isoform X1
KO
K10591
E3 ubiquitin-protein ligase NEDD4 [EC:
2.3.2.26
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi04120
Ubiquitin mediated proteolysis
rphi04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
132720153
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
132720153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rphi04131
]
132720153
04121 Ubiquitin system [BR:
rphi04121
]
132720153
03029 Mitochondrial biogenesis [BR:
rphi03029
]
132720153
Enzymes [BR:
rphi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
132720153
Membrane trafficking [BR:
rphi04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
132720153
Ubiquitin system [BR:
rphi04121
]
Ubiquitin ligases (E3)
HECT type E3
132720153
Mitochondrial biogenesis [BR:
rphi03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Morphogenesis factors
132720153
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HECT
WW
C2
Motif
Other DBs
NCBI-GeneID:
132720153
NCBI-ProteinID:
XP_060560175
LinkDB
All DBs
Position
Unknown
AA seq
942 aa
AA seq
DB search
MSSDDEIHGLSEDLTDQDGSTKILRIRVVSGTNLAKKDIFGASDPYVRISLTGDRETVYR
GDRESAVIDTVHTATIKKSLNPKWDEEFLFRVDPTKNVLLFEVFDSNRLTRDDFLGLVEI
PLNHTTIVTERPGRDVACKDYILRPRSIRSRVRGQLWLYLAYVDNEEESEPSNENPSAPQ
EPGWEMLDGFNALNTNDDGASASAESAGSASGPEQEVQAQDEPVEPLPPGWEEKRDATGR
RYYVNHTTRKTQWQRPQTGASYTGTSTSENTRSSSRSQHPRHSRSRHSDNLSPEHRSSLI
ISDQTISEDTTSESSRSRTQSFGASAMTTPARMPPGWEERVDANGRTYYVNHAHRTTQWE
RPTVETETEQESTTTEDDTRRIAQMYRQRRHISVEDTVSLGPDGNASSPAGARRLEFAHQ
NRTQSLNVQFGRQSSADSITRTGTGADDEEALPAGWATGVAPNGRVFYIDHNTAKTTWED
PRKPRSGSMRVSQDDASSPGSSLMRPSSNEDLLRNLGPLPDGWEERTHTDGRVFYINHKA
RKTQWEDPRLQALGGPAVPYSRDFKRKYDYFRSKLRKPSNVPNKTDIKITRSNIFEDSFR
IVMGIKRSDLLKTRLWIEFDGEVGLDYGGLAREWFFLLSKEMFNPYYGLFEYSATDNYTL
QINPLSGIFNEDHLTYFQFVGRVAGMAVYHGKLLDAFFIRPFYKMMLGKRITLDDMESVD
SEYYNSMCYIRDNDPECLDLYFSIEEDYFGEITERELKPNGKDILVTDANKMEYLDLIVK
WRFVSRVETQMRQFMKGFNELVSSSMLAIFDENELELLMCGLQDIDVNDWKNNSAYKGEY
NPNHPVIIFFWKAIYSFNNETRARLLQFVTGTSRVPMNGFKELHGSNGPQLFTIEKWGNI
TLLPRAHTCFNRIDLPPYESYSELRKKLLIAIENAQGFEGVD
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcggacgatgaaattcatggtctgtcagaggatctgacagaccaagatggaagt
acaaagattctgagaatacgagttgtatcaggaacaaatctcgcaaaaaaagatatattt
ggtgctagtgatccatatgtgagaatatcgctaacaggggatagagagacagtgtataga
ggggacagagaatcagcagtaatagatactgttcatactgcaactatcaaaaagagcttg
aatccaaaatgggatgaggagtttctattcagggtggatcctacaaaaaatgtattactg
tttgaagtgtttgattcaaatagactgacaagagatgattttcttggacttgtggaaatc
ccattgaatcatacaactatagtaactgaacgaccaggcagagacgttgcctgtaaagac
tatatccttagacctagaagtatacgttcccgtgttcgtggacagttgtggttatatctg
gcctatgttgataatgaagaagagagtgagccttccaatgaaaacccttcagctccccaa
gagcctggttgggaaatgttagacggattcaatgctctcaacacaaatgatgatggtgca
tcagcgtcggcagagtctgctgggtcagcgtcgggaccggagcaggaagtacaggcccag
gatgaaccagtggagccattaccaccaggttgggaggaaaagagagatgccactgggagg
agatattatgttaaccatacaaccagaaaaacacaatggcagagacctcaaacaggggca
tcatatactggcaccagtacatcagaaaatacacgctcaagttcacgatcacaacaccca
cgccattcaaggtcgagacattcagacaacttgagtcccgagcataggtcgagtctgatc
atttcagatcagactatttctgaggatacaacgtcggaaagttctaggtcacgtacccag
tcatttggagcttcagcaatgacaactccagcgcgaatgcctccaggctgggaagaaaga
gtagatgctaatggaagaacatattatgttaatcatgcccatagaacaacccagtgggaa
aggccaacagttgaaactgagacagaacaagagtctaccaccacagaagatgatacacgt
cgtattgcacagatgtatcgacaacgtcggcatataagtgttgaagacacagttagtctt
ggtccagatggtaacgcttcgtcaccagccggtgcccgacgccttgaatttgctcaccag
aataggacacagtctctcaatgttcagtttggtagacagtccagtgctgattccattact
cggacaggaacaggggcagacgatgaagaagctttacctgcaggatgggcaacaggtgta
gctccaaatggcagagttttttatattgaccataacactgccaaaactacttgggaggat
ccaagaaaaccaagatctggcagtatgcgtgttagtcaagatgatgccagctcacctggt
tcaagtttaatgaggccttcttctaatgaagatcttctaagaaatttaggacctttacca
gatggttgggaagagagaacacacacagatggacgtgtcttttatatcaatcataaggct
cgtaagacacaatgggaagatcccagattgcaagctttaggaggaccagctgtgccgtat
tcaagagactttaaaagaaaatatgactacttcagatcaaagttacgaaaacctagcaac
gtgccaaataagactgatattaaaattactcgcagtaatatatttgaagattcattcaga
atagtgatgggaattaaaagatctgatctgcttaaaacaaggctatggatagaatttgat
ggtgaagttggtttggactatggtggtttggccagggaatggttcttcctgttgtctaag
gaaatgtttaatccttattatggtctgtttgagtactcagccacggataattacacattg
cagatcaatccattgtctggaatcttcaatgaagatcatttaacatatttccagtttgtt
ggacgtgtagctggtatggcagtgtatcacggcaaattattagatgcatttttcatccga
ccattttacaagatgatgttgggaaagaggattacgctggatgatatggagtcagtggac
tctgagtattacaattctatgtgttatattcgtgataatgaccccgagtgtttagatctt
tacttttctattgaggaggactactttggtgagattactgagagagagttaaaaccaaat
ggcaaagatattttagtaacagacgctaacaaaatggaatatttagatctgatagtgaag
tggaggtttgtgtcccgtgttgagactcagatgagacaattcatgaaaggatttaatgaa
ctcgtgtccagtagtatgctggccatctttgatgagaatgagttagagttgttgatgtgt
ggtcttcaagatattgatgttaatgactggaagaacaatagtgcctataagggagaatac
aaccctaaccatcctgtcattatctttttctggaaggctatttattcgttcaacaatgaa
acccgtgctagattactccagtttgttactggaacttcccgtgttccaatgaacggcttt
aaagaactacatggaagtaacggtccacagttgttcacaatagaaaaatggggcaatata
actctgcttccaagagctcacacatgttttaaccgcattgatttaccaccatacgagtca
tattcagagttacgtaagaaactgttaattgcgatagagaatgcacaaggttttgaaggt
gttgattga
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