Ruditapes philippinarum (Manila clam): 132720378
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Entry
132720378 CDS
T09557
Name
(RefSeq) E3 SUMO-protein ligase ZBED1-like
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rphi03000
]
132720378
04121 Ubiquitin system [BR:
rphi04121
]
132720378
Transcription factors [BR:
rphi03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
132720378
Ubiquitin system [BR:
rphi04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
132720378
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
zf-BED
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
132720378
NCBI-ProteinID:
XP_060560490
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All DBs
Position
Unknown
AA seq
643 aa
AA seq
DB search
MSARKSKVWAFFAKVNDKKALCNICKAEVASSGGTTNMSTHLRRHHKIDPAIQSNALEKK
LPSGKVSDTVTASASSSCSSSSVSAIPWTISQQAKFPFAKSNEITNSVVYYLIQDLRPFS
TIESQPFRKMLFALEPRYQPPNRHTLAEKLIPNLLEKEKSALQSELNQALAVGLTSDAWT
SRSADSYLTITCHYLKDWNLQSKVLQTEHFHGSHTGENVGLELKTALLKWHIMDKVKVVT
VDNASNMTAAIRVSGVDLKLGCFAHTLNLASNKALNVTALGKVLGKIRSVVTFFHKSCIG
TEFLKQKQSGLGLPNHKLIMDCKTRWNSTYNMLQRFLEQRPAILATLLDERLKNVSAKAN
IVTNLSDSEINICEVFVKIMEVMVTATLALSEEKSPTVGLILPLLERLRKHFTVNSDDEP
FTKSLKAAVGTDLATRYTDPQLLVFLEEASALDPRTKNKACVNDDTWNRVLEKTILLTTV
VGKQVTVKQEPGLPVADSNLPPLPELPSDATTTCEEGPKINSMDDKTEIHKKTALECLFD
DDVQVIKEEPALSLQQRVLKQIDTYRKAKQLPMNANPLEFWKVHPEYPDLSLLAQTYFCV
QATSVASERVFSTSGDIVSATRSCLKPDLVDSLVFLKKNMTMP
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcgagaaagtcaaaagtgtgggcatttttcgccaaagtcaacgataaaaaggcc
ctctgtaatatttgcaaggccgaagtggcaagttctggcggcacaactaatatgtcaact
catctgaggaggcatcacaaaattgatccagccattcaatctaacgcattggagaaaaag
ttaccttcaggaaaggtttctgatacagttactgcaagtgcaagcagcagctgctcatcc
tcatcagtatcagcgattccatggacaatatctcaacaagcaaaatttccatttgcaaag
tcaaatgagattacaaactctgtagtatattatctcattcaggacctgcgccctttcagt
accatcgaaagccaaccatttagaaaaatgttatttgccttggagcccaggtaccaacct
ccaaatcggcacacattggcagagaagctgatacctaatctgttggagaaagagaaatca
gcacttcaaagtgaacttaatcaagcccttgcagttggtttgacatcggatgcatggaca
tcaaggtctgcggattcgtacttaaccatcacttgtcactaccttaaagattggaatttg
cagtcaaaagtcctgcaaactgaacattttcatggaagccacactggagaaaatgttggt
cttgaactcaaaacagctctattaaagtggcatattatggataaggttaaagttgtcact
gttgataatgcatccaatatgacggcagcaatcagggtttctggcgttgatcttaagctg
ggatgtttcgcccatacattaaaccttgcttccaacaaagcccttaatgtaacagcttta
ggaaaggttttaggcaaaataaggtctgtggttaccttttttcacaaaagttgtattgga
acagaatttttaaagcagaagcagtctggtcttggcttaccaaatcataaactgattatg
gattgtaagactcggtggaattccacatataatatgcttcaacgatttcttgaacaacga
cctgctattcttgctacattgctggatgaacgattaaaaaacgtgagtgctaaggcaaac
attgttactaacctttcagactctgaaatcaatatttgtgaagtttttgtaaagatcatg
gaggttatggttactgctactttagccttgtctgaagaaaagtcaccaactgttggtctt
attcttccattattagaaagacttcgtaaacactttacagtaaattctgatgatgaacca
ttcaccaaatccctgaaggcagcagttggcactgatctagcaacaagatatactgatcca
cagttgcttgtgtttctggaggaggccagtgccttggatccaagaaccaagaataaggct
tgtgtaaatgatgacacatggaacagagttttagaaaaaactattttgttgacaacagtt
gtgggtaaacaagtaactgtaaagcaagagccaggtctacctgtagctgatagtaatcta
cctcctttgccagaattgccttctgatgctactacaacctgtgaggaggggccaaaaatc
aactctatggatgataagacagagatacataagaagactgccttagagtgtttatttgat
gatgatgtccaagtgatcaaggaggagcctgcattatcacttcaacaaagagtattaaaa
cagatagatacttacagaaaggctaagcaactacctatgaatgctaacccattagaattt
tggaaggtacaccctgaatatcctgatcttagccttcttgctcagacctacttctgcgtg
caagcaacatctgttgcctctgagcgtgtttttagcacaagtggtgacattgtgtcagca
acaaggtcatgcttgaaacctgatcttgtggacagtttagtttttcttaagaaaaatatg
accatgccatag
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