Ruditapes philippinarum (Manila clam): 132720461
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Entry
132720461 CDS
T09557
Name
(RefSeq) pre-mRNA-splicing factor RBM22-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132720461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rphi03041
]
132720461
Spliceosome [BR:
rphi03041
]
Complex B
Other components
Prp19-related factors
132720461
Complex C
132720461
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
RRM_occluded
RRM_3
zf-CCCH_2
Nup35_RRM_2
RRM_YTH1
zf-CCCH
zf-CCCH_4
zf-CCCH_3
RRM_PARP14_3
zf-CCCH_12
zf-CCCH_10
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
132720461
NCBI-ProteinID:
XP_060560587
LinkDB
All DBs
Position
Unknown
AA seq
426 aa
AA seq
DB search
MATAKGANTYNRQNWEESEFPILCQTCLGDNPYLRMMKERYGKECKICARPFTVFRWCPG
ARMRFKKTEVCQTCSKIKNVCQTCLLDLEYGLPVQVRDAALKVQDNMPKSDVNKEFYQQN
MEREMAINEGVNPAGALGKAMAPSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRFYGLNDPVADKLMNRYSSMPKLESPEDKTITTLYVGGLG
DKVTEKDLKDYFYQFGEIRSINVVAKQQCAFVQFTSRSSAEAASEKSFNKLILNGRRLNI
KWGKSQGQQGQEKEEEKEEEKNLEPVPGLPGALPHPPEELANNFFNLSGAPPMHPMQMRH
PMPPRGPPHMMPMFIRGPPPPGVRLPPPPPGMMPLRPPPGVMPRGQVPQMHYPSQDPNRM
GAQQNG
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgcgaaaggagctaacacgtacaatcgacaaaattgggaagaatcggagttc
ccaattttatgtcaaacatgcctaggtgacaacccatatctgagaatgatgaaagagagg
tatggaaaggaatgtaagatttgtgcccggcctttcacagtatttcgctggtgccctgga
gccagaatgaggtttaaaaagactgaagtgtgtcagacatgttccaagataaagaatgtt
tgtcaaacctgtttattagatctggaatatggtctgcctgttcaagtgagagatgctgct
ctgaaagtacaggataacatgccaaagtctgatgtcaacaaagaattttaccaacagaac
atggaaagggagatggcaattaatgaaggggtgaacccagcaggtgccctgggtaaggca
atggccccgagtgacatgttgttgaagttggccaggaccacaccttattataagagaaat
agaccacatatctgttcattctgggtgaagggcgaatgtaaacgaggagaggagtgccca
tacagacatgagaagccgactgatccagatgacccgttggctgaccagaatatcaaggac
agattctacgggttaaatgatccagtcgccgacaagctaatgaacagatattcatccatg
cctaaactggagtcccctgaagataaaactatcacaacattgtatgtcggtggtctggga
gacaaggtgactgaaaaagatcttaaagattatttctatcagtttggagaaatacgttca
ataaatgtggtagctaaacaacaatgtgcatttgtacagtttacatcacgttcatctgcc
gaggcagcctcagaaaagtctttcaacaaactcattttaaatgggcggagactgaatatt
aaatgggggaaatctcaaggtcaacaaggtcaagagaaggaagaggagaaagaagaagaa
aagaatcttgagccggtccctggccttcctggagctttaccacacccgccagaggaatta
gcgaacaatttcttcaatttgagcggggcaccaccaatgcaccccatgcagatgagacat
ccaatgccaccaagaggaccacctcatatgatgcccatgtttataagaggtcctccacca
ccaggtgtgagactgccaccccctccccctggtatgatgccgttgagacccccaccaggt
gtcatgccccgtggccaggttccgcagatgcattacccatcccaggacccgaacaggatg
ggagctcaacagaatggatag
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