Ruditapes philippinarum (Manila clam): 132720486
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Entry
132720486 CDS
T09557
Name
(RefSeq) uncharacterized protein LOC132720486
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132720486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rphi03041
]
132720486
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132720486
Spliceosome [BR:
rphi03041
]
Complex C
Other components
Step II factors
132720486
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
KH_DEAH11
IBR
RRM_1
IBR_1
OB_NTP_bind
DEAD
AAA_19
zf-RING_2
AAA_22
IBR_2
KH_DEAH11_2nd
nSTAND3
HA2_C
zf-C3HC4
KH_1
ABC_tran
AAA_30
Alba
RsgA_GTPase
AAA_29
ATPase
WipA_N
Motif
Other DBs
NCBI-GeneID:
132720486
NCBI-ProteinID:
XP_060560621
LinkDB
All DBs
Position
Unknown
AA seq
1760 aa
AA seq
DB search
MASRQSKEDVTDWRKNSMRHNHSFQREQTIPTEKNVRGEKNEQPYNRSGKDTNGSEREDQ
RGRSSTKSTQRHDEAFHGRQNVPKKHQAKRTILYVVTGDKVTENRNLKSFLLSRMGNPRE
LDFLVTKVTNIKKDGRIKNVIYLEFESFNKASLGKHLLHKSNRNVPNKLICSLDRTEAEG
EVVDTAKQRQEQIDKAHKEIVERAESFIERHDAKINEIRDKLTDIDAQLRNKSGVSLPEF
DKLSNEKSAFEDKLEEFARQRKEFNRYMQCMKDKMQSLLNCDKFEKELQEVRTAFGVECR
RFSTSLPMYARREDILNTIKENQVCVILGETGSGKSTQMVQYLYQSGFAAKGLIACTQPR
KIAAVSLATHVSAELASRVGQIVGYKVGMQKKLTTITKVMYMTDHILLNECLADRVLKQY
SCILIDEAHERSIYTDLLLGMLKQALKERPELKVIITSATIEPDIFVKYFGGKDLCPVLK
VSGRAFPVDVYWEYDYFSERAFPEDYESKALNKAIEIHNSTAIDAGDILVFLTAVAEIER
CAEKLSERGDTNVHCLQLHGRLKPEEQQLVFEKTPRGKRKIVFATNSAETSITIPGIKFV
VDTGVVKEMRFNPKKNMNSLNVVSVSKSSANQRKGRAGRTTSGICYRLYSEEEYSNMETT
SCPEILRIQVSQALLKLLELGVDPMKFDYVQSPSHETMKSAMDELMSIGATNKAGITELG
KWIAKLPLEPKLGLLIKKGIESDIVNEALVVASCCNQSGIFYRVGTLEEKRAADLKKMKF
CHKGGDLLTMLNVFREWNKIPEKGKGSWCDSNSINGKAIKGVRDTTNEISSILKKDLGIK
IKYEFKQPEKVDPQIQRLIFDIMVANIGYFLGHEGAGYLIVNRNQRVMLHPSCAILALGL
QPSWVVFNKVLKTSEDFMTEVTPVSDKAITDAIESRILNVNLTALESLRLKLALKLPVGK
HVKWKFVGPLHKNRRKVEEDISKECDESLVVVEANNRRGDVSLFCLSQYVEKASALLRSV
IEPMPELLRYESREEHIGDERSGFRAVLREGGRVVEVLMPNEYRSLKIILKECNFRTKID
EGSIRKLLMPYGPIEQIWRQTGNKQGNNQFWGKVTFTHQNDAVAAFQHVNNDRNAKIKLE
PNTFQNTLAQQGFTMKLTWCRRPSKGHCFVTTNRPEDRPILLMSSPKVNGVPVSISLSKQ
QSDLFIKYLPADVTDESVKTALGEVLGISTNACQDRFRVVIPRTNVIWNANERTRQQDEL
YRVVSKFADRESFRLHVREYRQQAAICVAFVTFSDPQLCNDTAMKLIQSQEKCEGKKIQV
SLECKASLHIKKGLYELVKDDFQGLIDEHTHAHSSTVLDLKTLKSGHFSLEIRADSPLEL
AQAKLKFQNVIGGDTLCWESTKNIKVMFTKNGKQRAQEIEKETKAMIIVDERDMTVTIQG
LISNRRRATSFIEEYMKIHSGTEETVIRLKGEDNPPGLMKVLLMKYGITFDDFKKETDVS
GVELNLRLHEIAISGRSEAIGKALQLVNSLKEELIKKEEGRKHINDLPDCPICLCPVKES
DICSLEYCGHAYCKVCLKSYIRHAVTGRQLPVSCAAENCNKLLVIRDINTQVKMGSIKRK
DLLDSALSCFVNTRSKDFRFCITPDCGMVYRVTKNGKLFFCPTCRIKICTTCHIPYHEGL
TCSMYNVARKEGDSMLEWMKEDPSNRKVCPKCNYGIEKTGGCNHMQCSMCRANICWSCMT
FFSEVGDYMKHVDSVHGNFV
NT seq
5283 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtaggcaaagtaaagaagatgttactgactggcggaaaaattcaatgagacat
aaccattcttttcaaagggaacaaactataccgacagagaagaatgtaagaggagagaag
aatgaacagccgtacaataggtccggaaaagacacaaatggcagtgaaagagaagatcag
cgagggagaagtagtacaaaatcaactcaaagacatgatgaggcttttcacggtagacaa
aatgtgcctaagaaacaccaggctaagagaacaatcctgtatgttgtaacaggtgacaaa
gtaactgagaacagaaacttaaaaagctttttattgtctagaatgggcaacccgagagaa
cttgactttttagtgacaaaggtcacaaatatcaaaaaagatggtagaataaaaaacgtt
atctacctggagtttgaaagttttaacaaagcttctcttggaaaacatttactccataaa
agtaatagaaacgtaccaaataagcttatttgctccttggataggacagaagcggaagga
gaagttgttgacactgctaaacaaagacaggaacaaatcgacaaagcacacaaggaaatt
gttgaacgagctgaatctttcatcgagaggcatgatgcgaaaataaatgaaattcgtgac
aaactcactgacattgatgcacagcttagaaataaaagcggggtttcccttcccgagttc
gataaactaagcaatgaaaagtctgcttttgaagataagttggaagagtttgcaagacag
agaaaagagtttaatagatacatgcaatgtatgaaagacaagatgcaatctctcttaaat
tgtgacaaatttgagaaagaattgcaagaggtgagaacagcttttggtgttgagtgtaga
cggttttcaacatctttacctatgtacgcaagacgtgaagacatccttaatacgatcaag
gaaaaccaggtgtgtgtgatactcggtgagactggttcaggcaagtcgactcagatggtc
cagtatttatatcaatctgggtttgcagcaaaaggactcattgcctgtacccaacctaga
aaaatagctgcagtcagtcttgcgacacatgtttctgcagaactagcatcgagagttggt
cagattgttggttataaagttggaatgcaaaagaaattgacaacgataacaaaggttatg
tatatgactgatcacatacttctaaatgaatgcttagctgatagggttttaaaacagtac
tcgtgtatcttaatcgatgaagcgcacgaacggagtatttacactgatttgcttcttggt
atgctaaagcaagctttaaaggaaagaccagaacttaaagttatcataacatccgctacg
atagagccagatatatttgtaaaatactttggtggaaaagatctttgtcctgtcctaaaa
gtctctgggagagcatttccggtagatgtatattgggaatatgactacttttcagaaaga
gcctttccggaagattatgaatcaaaagctctaaacaaggcgattgaaattcataattca
acagctatagatgcaggagatattcttgtttttcttactgctgtagctgaaatagaaaga
tgtgcagagaaattatctgaacgaggagatactaatgttcattgcctgcaacttcatggt
agacttaaaccagaagagcaacaacttgtctttgaaaaaacacctagaggaaagcggaag
attgtttttgctactaacagtgctgaaacatctattacaattccaggcataaagtttgtg
gtggatacaggagttgtcaaggagatgagatttaacccaaagaaaaacatgaattcgttg
aatgtcgtatcagtcagtaaaagctcagcaaatcaacgtaaaggacgtgctgggagaaca
acatctggcatttgttatagattgtactcagaagaagagtacagtaatatggaaacaaca
tcatgtcctgaaatacttagaatacaagtgtcacaggctttacttaaattgttagaacta
ggggtagatccaatgaaatttgactacgtccaatcaccgtcacacgaaacaatgaaatca
gccatggacgagttgatgagtatcggagcaacaaataaagcaggcataacagagcttggt
aaatggattgcaaaattgccacttgagccaaaactcggcttacttataaagaaaggaatt
gaatctgatattgtaaatgaagctctcgtagttgcttcttgttgtaatcaaagtggaata
ttttaccgtgtcggaacactggaggagaaacgagcagccgatttaaagaagatgaaattt
tgtcataaaggaggagacttacttacaatgctgaatgtgtttagagaatggaacaaaata
ccagaaaaagggaaaggcagttggtgcgacagcaacagtataaatggaaaggcaataaaa
ggggttcgagatacgacaaacgaaatttcatcaatacttaaaaaagatttaggtattaag
attaagtatgaatttaagcagcctgaaaaagtagatccacaaatacaacgtttaatattt
gacattatggtcgcaaatattggctatttcttgggacatgaaggcgctggatatcttatt
gtaaaccgaaaccagcgcgtgatgctgcatccttcgtgcgctattttagctttaggtctc
caaccaagctgggtggtatttaacaaagttctgaaaacctctgaagattttatgacagaa
gtaacaccagtgtcagacaaggctataacagacgctatagaaagtcgaattcttaatgtc
aatttaactgctcttgaaagtctgaggttgaagctagcactgaaattacctgttggaaaa
catgttaaatggaagtttgttggtccactccataaaaaccgcagaaaggttgaagaagat
atttcaaaagaatgtgatgaatctttagtcgttgttgaagcaaataacagacggggagat
gtcagtttattttgtttgtcacaatatgttgaaaaggcatcggcactgctgaggtctgtc
attgaaccaatgccagaacttttacgatatgagtcaagggaagagcatattggagatgaa
agaagtggttttagagccgttttgagggagggaggacgtgttgtagaagtgctcatgcca
aatgaataccgatccctcaaaataattctaaaggagtgcaattttagaactaaaattgat
gaaggtagcattagaaaactgttaatgccttacggaccaattgaacagatttggagacaa
actggaaacaaacagggcaataatcagttttggggaaaagtgacattcactcaccaaaat
gatgctgttgctgcatttcaacatgttaataatgacagaaatgccaaaataaagctagaa
ccaaatacatttcagaatacacttgctcagcaaggttttacaatgaaactgacgtggtgc
cgtcggccctccaaaggacactgcttcgtcacaacaaatcggcctgaagatcgcccgatt
cttttaatgtcgtcgccaaaggtcaacggtgtccctgttagtatttctttaagcaaacaa
cagtcagatctgtttataaaatatttgcctgcagatgtcactgatgaaagtgtcaaaaca
gctctaggagaagtactaggcatatccaccaacgcttgccaagaccggtttcgtgttgtt
atcccacgtacgaatgtaatttggaatgcaaatgaaaggactaggcaacaagatgaattg
tatagagttgtatcaaagtttgcagacagggaatcttttcggttacatgtaagggaatat
aggcaacaagcagctatttgtgtagctttcgtaactttttcagacccacaattatgcaat
gatactgcaatgaaattgattcaaagtcaggaaaaatgcgagggaaaaaagatacaggtc
agtttggaatgcaaagcatctttgcacatcaagaagggactttatgaacttgtaaaagac
gattttcaaggattaattgatgagcatacgcatgcacattcaagtacggtcttagacctt
aaaacattgaagtcgggccatttttcactcgaaataagagctgattctccattagagctt
gcacaagctaaacttaagttccaaaatgtaattggtggagatacactttgttgggaaagc
acaaaaaacattaaagtaatgttcactaaaaatggaaagcaaagggcacaagagattgaa
aaagaaacgaaggccatgataatagttgatgagagagacatgacagttacaatacaaggt
ctgatttcaaatagaaggagggctacttcatttattgaagaatatatgaaaattcactct
ggtactgaagaaacggtaatacgtctaaaaggggaagacaatccacctggtttgatgaaa
gttttattaatgaaatatgggataacctttgatgacttcaaaaaggaaaccgatgtgtca
ggggtagaacttaacttgagacttcatgaaatcgctatatctgggagaagtgaagccatt
ggaaaagctcttcagctcgtgaatagcttaaaagaagaattgataaaaaaggaagaggga
agaaaacacataaatgacttaccagactgtcctatatgtttatgtcccgttaaagaatct
gacatttgtagtcttgagtattgcggtcatgcatactgtaaagtatgtttgaagtcatac
atacgtcatgctgttactggtcgacagcttcctgtgtcttgcgctgctgagaattgcaac
aagctactcgtgattagagatattaatacacaagtcaaaatgggatccatcaagagaaaa
gatcttctagattcagctttgtcatgctttgttaatacacgaagtaaggattttcgtttt
tgtataacaccggactgtggtatggtgtacagagttactaaaaatggaaagttattcttt
tgtccgacatgtcgtataaagatttgtaccacttgtcatattccatatcacgagggtctg
acatgttcaatgtataacgtcgccagaaaagagggagactctatgctcgaatggatgaaa
gaggatccttcaaatagaaaagtatgcccaaaatgcaactatggaatcgaaaaaacgggc
ggatgcaaccatatgcaatgttcaatgtgtagagcaaacatctgttggtcgtgtatgaca
ttcttttcagaagtaggtgattacatgaagcatgtagattctgtccatggtaactttgta
taa
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integrated database retrieval system
