Ruditapes philippinarum (Manila clam): 132720488
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Entry
132720488 CDS
T09557
Name
(RefSeq) uncharacterized protein LOC132720488
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132720488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rphi03041
]
132720488
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132720488
Spliceosome [BR:
rphi03041
]
Complex C
Other components
Step II factors
132720488
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KH_DEAH11
Helicase_C
IBR
RRM_1
DEAD
OB_NTP_bind
IBR_1
AAA_22
AAA_19
zf-RING_2
nSTAND3
HA2_C
RRM_DEAH11
KH_DEAH11_2nd
RsgA_GTPase
Helicase_RecD
ABC_tran
AAA_30
ACBP4_C
MinE
Motif
Other DBs
NCBI-GeneID:
132720488
NCBI-ProteinID:
XP_060560624
LinkDB
All DBs
Position
Unknown
AA seq
1908 aa
AA seq
DB search
MNEEPHNDGLAGSKREEPGSKKVSKDDSKTDQNADKTDTRKKWYAHGRRRHTSETGYVGY
KQGENVENDLGARPKEFRRQTFFNRKYERRGSLGSKFQSDITNEGGRCYLNKSGKIDRAE
RKEPKDFKTTKTYCRKEAQGENIERHVDKPQSNIEGKPPKYVKPGFNKNRNKTPTPKSFK
GSNISLNTVLQEHGDVNSTNKATGGQSMKTEENVMHKKRKSKENVNKVTELKNHAKKTCL
YVVIGERIINQSSLKNFLLHRMGNPKALEFEIADSYNINKGGSDRSILSLKFDSYKKASA
ARHLLNRNNRTAVDKIRCSFDRAEAEGVEINSAQQNECKKEIALKEIVATARFEIEKHDE
KINDIRVKLEAVAGHLANKRGVSLFEYDKLSNEKLAYEDKLDELERQRKEFTRYLQSMSV
KLEAIINNKCDKFEHELKEVRKAFGVECHRLQSALPMYARREEILSIIKENQVCVILGET
GSGKSTQMVQYIYQAGFAGDGLIACTQPRKIAAVSLASHVSSELASSVGQVIGYKVGMQS
KMTALTKVMFMTDHILLNECLQDTMLTKYSCIIIDEAHERSIHTDLLLGMIKDALNNRPD
LKVVITSATIDPDIFVDYFGGLDLCPVLRVSGRTFPVEVFWEQDNDVDSSFSDDYEKKAL
NKAIEIHQNEKEGDILVFLTSAAETDRCKERILRMVGEKEVQCLQLHGKLKPEEQQLVFA
NTPRGKRKIVFATNSAETSITIPGIKYVVDTGVVKEMRFDPKKNMNSLDVVQVSQSSADQ
RKGRAGRTSSGVCYRLYTHKIYRSFKKASSPEILRIQVSQALLKLMELGVDPMSFDYVQS
PSPMAMKSALGELEEIGAVDTKGISELGRWIAKLPVEPRLGALIKKGMDMDITLETLIVA
SCCNQSGIFFRMGTPEEKKEADAKKMKFCHLGGDLLTMLNVYREWDKIQEKAKGKWCQTN
SINGKAMKGVRDMMNEMVSVIKKDLDLKIKHEFKSPQDSDACVQNLIFECMTSKLAYYLG
HESAGYLIVDRHQRVQLHPSSAILSLAFQPGWVVFNRVLKTSADFMTEVTPLSDDVVKDA
IIKGKINVDMKLLENMKVKRVLKAPVGRHVFWKFVGPMHKNRRQVEEDISFACNGSLIVI
EANKQRGEISLFSTNEYAKRASSMLRSILDEAPQQLLNESREEPIGHDRSCIRAVLREGG
SAVDILMSDDYRAVNIKQKDNVMFDINEESIQTLLEDYGPVEQIWQTTGKRQQQSPFWGK
ATFTHKYDAKYAVEEINEDENCEFRLLPIIYDSQISAPKQGYTMKLTWCRRLGKGHCFVY
LNRPEDMTQILTNAPMINGTYVQVMISKQQSDLYIKGLARDATEDEVRDGLGSALGLSSY
ECRNRFRIIIPRLNVPIDNNEKDQIQNELASIISMYADRDSFRVHVKTYKQQTVTCVAFV
TFMNPQICYDTANAMIDDDVEIREHCIDVQLECKTTVHVNKKLHDFVGQDLTSLVDRYVR
KKSSTTLNIRHLKSGNFSVDINAVSPQKLAKAKVKVENVVGGDTFECGEKENLQFFFNKN
GRDEARRIEKLTRTLIFVDERQMKISIQGLVRNRLRAIQMIEDYLSVHTHAKETEVCLKG
EENPPGLLKDLIIRYGLRLTGLKDETGISKVSFNLRFHELTLIGKEENIIKAQEQIKSVR
ADLSTRGNIRIEDADLPDCPICLCPVEESDMCRLEYCGHAYCKCCLASMIQNAVSDRELP
VVCAAEDCNKALVIRDINTQIKIGNIKRNALLDSAVAALVMKKSEEYHYCITPDCGIVYR
VTKIGEMFSCPVCRVRICTACHLPFHEGITCAMYKSAKQSGDSLVKWLRVDPSNRKLCPK
CGLGIQKTGGCEHMECKCGAHICWKCMRYFSSSGSCYGHLSEAHNSFV
NT seq
5727 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagagccacacaatgacggtttggccggtagtaaaagagaagaacctggctct
aagaaagtttcgaaagatgatagtaaaactgatcaaaatgctgataaaacggacacacga
aagaagtggtatgcacatggcagaagaagacacacgtctgaaactggatatgttggatat
aaacaaggtgaaaatgtggaaaatgatctaggtgcaagaccaaaggagtttagacgtcaa
acattttttaacagaaagtatgaaaggagaggatcactgggtagtaaatttcaaagcgac
ataactaacgagggaggaagatgttatctaaataaaagcggtaagattgacagagcagaa
aggaaagaacctaaagattttaaaactacaaaaacatattgtaggaaagaagcacaaggc
gaaaatattgaaagacatgttgacaaaccacaaagtaacattgaggggaaaccacctaaa
tatgtcaagccaggtttcaataaaaatagaaacaaaacaccaacaccaaagtcattcaaa
ggaagtaacatatctttaaatactgttcttcaagaacatggtgatgtaaatagcacaaac
aaagcaactggaggtcagtcaatgaagacagaagaaaatgtaatgcacaagaaaagaaag
agcaaagagaatgtgaataaagtcactgaacttaaaaaccatgcaaagaagacgtgtctt
tatgttgtcattggtgaaagaataattaatcaaagtagcttaaaaaactttctacttcat
agaatggggaatccaaaagctcttgaatttgagattgctgattcctataatattaacaaa
gggggttctgatcgtagtatattatctttgaagtttgacagttacaagaaagcatcagca
gctagacatttgctaaacagaaataataggactgctgtcgataaaataaggtgttccttc
gatagagcagaagcagagggtgtcgaaattaatagtgctcaacagaatgagtgcaagaaa
gaaattgcattaaaagaaatagtggcaacagctaggtttgagattgaaaaacacgatgaa
aaaatcaatgatatccgtgtgaaacttgaagctgttgctgggcacctagctaataagcgc
ggagtctccctttttgaatacgacaaactatcgaatgaaaagcttgcatatgaagataaa
ctggatgagctagagaggcaaagaaaagagtttacaagatacttgcagagcatgtcggtg
aagttggaggctattattaataataaatgtgacaaatttgaacacgagctgaaagaagtc
aggaaggcatttggtgtggaatgtcataggttgcaatctgctttaccgatgtacgccagg
agagaagaaatcctatcaatcattaaagagaaccaagtttgtgtgatactcggtgaaaca
ggatctggcaagtcaacgcaaatggttcagtacatctatcaagccggttttgcaggtgac
gggctaattgcatgtactcagccccgaaagatagcagccgtaagccttgcgtcacatgta
tcttcagaactcgcttcaagtgttggtcaagtcatagggtataaagtaggaatgcagtcg
aaaatgactgcattaacaaaagtaatgtttatgactgatcatatattattgaacgaatgt
ttacaggataccatgttgacaaagtattcatgtatcatcattgacgaagctcatgaacga
agtatacatactgatttacttctaggtatgattaaggatgccctaaataatagaccagat
ctcaaggttgtaataacatctgcaactatcgatccagacatctttgttgactattttggc
ggtttagacctatgccctgttcttagggtgtcgggtagaacctttcctgtagaagtgttt
tgggaacaagataatgacgttgacagttcgttttcagacgattatgaaaagaaagcactt
aacaaagcaatcgaaattcaccagaatgagaaagaaggtgacatacttgtttttttgact
tcagctgctgaaactgataggtgtaaagaaaggatactaagaatggtcggagaaaaagaa
gttcagtgcctgcagcttcatggaaaacttaaaccagaagaacaacagttagtgtttgca
aatacaccaagggggaaacggaaaattgtctttgctacaaatagcgctgaaacatctata
acaataccaggcatcaagtatgtggtagatactggtgttgtaaaggaaatgagatttgac
cccaaaaagaacatgaattcacttgacgtggtacaagtcagtcaaagttcagcagaccaa
cgcaaaggtcgtgccggaagaacttcgtctggtgtttgttacagactgtacacacacaag
atatatagatcttttaaaaaggcatcaagccccgaaatcttaaggatacaagtgtcacag
gctttacttaaattgatggaattaggtgtggatccgatgagttttgattatgttcagtca
ccttctccaatggcgatgaaatcagcgttgggggaactggaagaaattggtgcggttgac
acaaaaggcatatctgaacttggccgatggattgctaaattgccggtcgaaccaaggctt
ggggctttaattaagaagggaatggatatggatataactttagaaacgcttatagttgca
tcttgttgcaaccagagtggaatatttttcagaatgggaacacctgaagagaaaaaggaa
gcagacgcgaaaaagatgaagttttgtcatcttggcggagatttattgaccatgttgaat
gtttacagagaatgggataaaatacaagagaaggcgaaaggaaaatggtgtcaaacaaac
agtataaatgggaaagcaatgaaaggagtaagggacatgatgaatgagatggtctctgtt
ataaagaaggacttagacttaaagataaagcatgagtttaaaagcccgcaagactcggac
gcttgtgtacaaaacctcatatttgaatgcatgacatccaaactagcttattaccttgga
catgaaagcgcaggatatcttattgtcgataggcatcagagagtacagttacacccttcg
tcagcgattttatcgcttgcttttcaacctggttgggttgttttcaatagagttctgaaa
acttcagcagatttcatgacagaagtgacacctttgtctgatgacgtagtcaaagatgca
atcataaaaggcaagattaacgttgacatgaaattattggagaatatgaaagttaagcgt
gttcttaaagctcctgttggcaggcatgtgttttggaagtttgtaggacctatgcacaag
aacaggcgtcaggttgaagaagacattagttttgcctgcaacggatccttaattgttata
gaagctaacaaacaacgtggtgaaataagtttatttagcacaaatgagtacgcaaaacga
gcttcttccatgcttcgctcaatactagacgaagcacctcaacagcttcttaacgagtca
cgcgaggaaccaattggccatgacagaagttgcatacgtgccgttttacgagaaggtggt
tctgcggttgatattcttatgtcagatgattatcgggcagttaacataaagcagaaagac
aatgtaatgtttgacattaacgaagaaagcatccaaacattgcttgaagattatggacct
gtagaacagatatggcaaacaacggggaaaagacagcaacaaagtccattttggggaaag
gcgacatttacacacaaatacgatgctaaatatgctgttgaagaaataaatgaagatgaa
aattgcgaatttagattgttaccaataatatacgactcccaaatatcagccccaaaacaa
ggttacaccatgaagctgacatggtgtagacgactgggaaagggacattgttttgtttat
cttaatcggccggaggatatgacgcaaattttaacgaatgcaccgatgataaatgggaca
tatgttcaagttatgatttcaaaacaacagtcagatttgtacataaaaggattagcacga
gatgcgactgaagatgaagtcagagatggacttggcagtgctcttggactgtcttcttac
gaatgtagaaatagatttcgcataattattcctcgtctcaatgtgcctattgataataat
gaaaaggaccaaatccagaatgaacttgcttcgattatttcaatgtatgctgatcgagac
tcatttcgcgtacacgttaagacttacaaacagcagactgtaacgtgtgtagcgtttgtt
acttttatgaatccacagatttgttacgacacagcaaatgctatgatagatgatgatgta
gaaatacgggaacattgtattgatgttcagttagaatgcaagacgacggtgcacgtaaac
aagaagctgcatgacttcgttggacaggatttaactagtctagtagacagatacgttcgc
aaaaaatcatcaacaactttgaatattagacatcttaaatctggcaatttctctgtggat
atcaatgcggtttcaccgcaaaaactggctaaggctaaagttaaggtcgagaatgttgtc
ggaggggatacgtttgaatgcggggaaaaagaaaacttacagttctttttcaataagaat
ggtcgagatgaagcacgacgtatagaaaaactaacaaggaccctcatttttgttgacgaa
agacaaatgaaaatatctatacaaggtcttgtccgtaacagacttcgagccatacaaatg
atagaagattatttatcggtccatacacatgctaaagaaacagaagtttgtctaaaaggg
gaagaaaatccaccaggacttttgaaagatttgattattagatatgggttgcgtttaaca
ggacttaaagatgaaactggcatttctaaagtatccttcaacctacggtttcatgaacta
actcttattggtaaagaggaaaatataattaaagcacaagaacagataaaaagtgtgaga
gctgacttgtcaacacggggaaatattagaattgaagacgcagatttaccagattgtcct
atttgtttatgcccagttgaagaatctgatatgtgtcgacttgaatactgtggccatgcg
tattgcaaatgttgtttggcttcaatgattcaaaacgccgtatcagatcgtgaacttcct
gttgtctgtgcagcagaggactgcaataaagctcttgtcataagagatatcaatacgcaa
ataaagattggcaatataaaaagaaacgcacttcttgactcagctgtggcagctttggtt
atgaagaagagtgaggagtatcactattgtataactccagattgtggaatagtttatcga
gtgaccaagattggtgaaatgttcagctgtcctgtttgtcgggtcaggatatgtacagcg
tgccatttgccattccatgaaggtataacatgtgccatgtacaagagtgctaaacagagt
ggggattcgttagtgaaatggctgagagttgacccgagtaatcgaaaattatgcccgaaa
tgtggtttaggaatccagaagacaggaggctgtgagcatatggagtgcaaatgtggtgct
catatatgttggaaatgtatgaggtattttagtagtagcggctcttgttatggccatctg
agcgaagcccataatagttttgtttaa
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integrated database retrieval system
