Ruditapes philippinarum (Manila clam): 132720759
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Entry
132720759 CDS
T09557
Name
(RefSeq) ATP-dependent RNA helicase DHX15 homolog
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132720759
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rphi03041
]
132720759
03009 Ribosome biogenesis [BR:
rphi03009
]
132720759
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132720759
Spliceosome [BR:
rphi03041
]
Complex A
U2 snRNP components
U2 related factors
132720759
Complex B
132720759
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
132720759
Ribosome biogenesis [BR:
rphi03009
]
Eukaryotic type
90S particles
Helicases
132720759
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
DUF4559
HA2_C
Helicase_C
DEAD
HA2_N
AAA_19
AAA_22
Flavi_DEAD
ResIII
GIT_CC
nSTAND3
SlyX
Trnau1ap
Motif
Other DBs
NCBI-GeneID:
132720759
NCBI-ProteinID:
XP_060560952
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MSHDQQLKNTKYRNWVKAALGLKYLGNGLAPLVDDAIKRQHNDILSDIDRTYVARSRCGQ
CRLETLLPIHTPDPGNKCPLQQKPSCNCQSSRGKTLCPSILCSAIYDKLIIQHRYSSPNW
KNTDVSQWFDNYWQIAKVFIPAGGYYSNVAAHDTDCAGLLNIIINNTIMHTLFDTVIDAP
NDIFSKTRAARDNIFHSSRLELEDAELGAILDNMVAILEDEKQLKNTQSAIDARENIRQL
RKQNFVITASDEESIKSAMDALKELEQFALESIREKHREVIDEIQTYGLQHKIKTEEFIE
LDTRLESTEQTIEKVQQKQAEFGDSTHQLHVQMEELNQEFARMKSNELYSETRPEHENNL
KYKGKKEELSQLLSKRKALPVWGYKEKFVQMFNKHQTLVLLAETGSGKTTQIPQWCLDWL
RLRCNKKGVACTQPRRVAAMSVAQRVSEEMDVGLGQEVGYSIRFEDCTSSKTILKYMTDG
MLLREAMSDPFLENYGVVIIDEAHERSMATDILMGLLKEVAKQRHDLKIIIMSATLNAGK
FQIYFDNAPLMSVPGRTYPVEIYYTPEPERDYLEAAIRTVIQIHMCEEIEGDIILFLTGQ
EEIDEACKRIQREVDTLGPDVGKIKCVPLYSTLPQHLQQRIFEPPPPNKANGAIGRKVVV
STNIAETSLTIDGVVFVIDSGFAKEKVYNPRTHVESLLVTAISKASAQQRAGRAGRTRPG
RCFRLYTEKVFKQKMIENTYPEILRSNLSSAVLQLKKLGFDDLVHFDFMDPPVPETLMRA
LEDVNYLAALDDDGDLTELGSMMTEFPLDPQQAKMVITSTDFNCSNEILSIAAMLSVPQC
FVRPKELRKTADECKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYANFINFRSLKSADN
VRQQLVRIMDRLKLKRSSTEFTSRDYYLNIRKALVSGYFMQVAHLERTGHYMTIKDNQIV
QFHPSTCLDHTPEWVLYNEFVLTAENYIRTVTDVKPEWMVQIAPQYYNIPNLRNCKAKRQ
VERIIAKVQAIGYE
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgtctcatgatcaacaattgaagaataccaagtacagaaactgggtaaaagccgcccta
ggcttaaagtatttaggaaatgggttagctccccttgttgatgatgcaattaagaggcaa
cataatgacattctttctgacattgacagaacctatgtcgcacgttcaagatgtggacag
tgccgactagaaactctacttccaatccacacaccagatccaggcaacaaatgcccttta
caacaaaagccgtcttgcaattgtcaatcatcgcggggaaaaacactttgtcctagtata
ctttgtagcgcaatctatgacaaacttattatccaacaccgatattcatcccctaattgg
aaaaatacagacgtttcacaatggtttgataattactggcaaattgcgaaggtatttatc
ccagctggaggatactattcgaatgttgcagctcatgacacagactgcgcagggctctta
aacattatcatcaacaacacaataatgcataccctatttgacactgtgattgatgctccg
aacgacatattctcaaagacaagagcagcacgtgacaacattttccattcttcaagatta
gagcttgaagatgctgagttaggagcaattctcgataacatggtagctatacttgaagac
gaaaagcaacttaagaatactcaatctgcaattgatgctagggaaaacatcagacagctg
agaaaacaaaactttgttattactgcgtccgatgaagaaagcataaaatctgcaatggat
gctttaaaggaattagaacaatttgccttagaatcaatcagagaaaaacacagagaagta
attgatgaaattcagacgtatggacttcaacataaaattaaaacagaagaatttattgaa
ttagatacaaggctagagagtaccgaacaaacaatagagaaggttcaacagaaacaagca
gaattcggtgatagtactcatcagcttcatgtacagatggaggaacttaatcaggaattt
gctagaatgaaatcaaatgaactttattctgaaacaagaccggagcatgagaacaacttg
aagtataaaggcaaaaaagaagagttatcacagctcctttctaaaaggaaggcattgccg
gtgtgggggtacaaagaaaagtttgtacagatgtttaataaacatcagacactagttctt
cttgcagagacagggtctggtaaaacgacacagattccacaatggtgtctagattggcta
cgattacgatgtaacaagaagggcgtagcatgcacacaaccccgcagggtggctgcaatg
tctgttgcacagcgtgtatctgaggaaatggacgttggcctcggacaggaagttggttac
agcatcagatttgaagattgcacatcatctaaaaccattctcaaatacatgactgacggt
atgttgcttagggaagctatgtccgatccatttcttgagaactatggtgttgtgataatt
gatgaggctcatgaacgttcaatggctacagatattctgatgggcctattgaaggaagtg
gcaaaacagagacacgatctcaaaattattattatgagtgctacattgaatgctggtaaa
tttcagatttattttgacaatgcaccgttgatgagtgttcctggaagaacctatcctgtg
gagatttattacacgccagagcctgagagagattatctagaggccgccattagaacagtg
atacagatacatatgtgtgaagaaattgagggagatattattctctttcttacaggacaa
gaggagattgatgaagcttgtaagagaatacagcgtgaagtagacactttgggaccagat
gtaggaaaaatcaagtgtgtccccttgtactccacgttaccgcaacatctccagcaaaga
atatttgaacctccgcctccaaacaaggcaaatggagccattggtagaaaagttgttgtc
tccacaaacattgctgagacctcgttgaccattgatggagtagtgtttgtgattgattcg
ggttttgcaaaagaaaaggtgtacaaccctagaactcatgttgagtcattattggtgact
gccattagtaaggcaagtgcgcaacagagggcaggtcgtgccgggagaacaagaccagga
agatgttttagactttatacagaaaaagtgttcaagcaaaagatgattgaaaacacatat
ccagaaatattgagatcaaatctcagttctgctgtattacagttgaagaaattaggattt
gacgatctcgtgcattttgatttcatggatcctccagttccggaaaccttaatgagagct
cttgaggatgtaaactatttggcggctctcgatgacgatggtgacttgacggaattgggg
tctatgatgactgagttcccactagatccacagcaggctaagatggttataactagtaca
gactttaactgctcgaacgagatcctctctatagcggccatgttatcagttccacagtgc
tttgtgcgtcctaaggagctacggaagacagctgatgaatgcaagatgagatttgcccac
attgatggtgatcatctgacactgcttaatgtttaccacgccttcaaacagaaccaagaa
gatccgcagtggtgttatgccaactttataaacttccggtcattgaaaagtgcggacaat
gtacgtcaacaattggttaggatcatggacaggctcaaattgaagagaagcagtacagag
ttcaccagtcgcgattactacctgaatatacgtaaagctcttgtgtccggttatttcatg
caggttgcacatttggagaggactggacactatatgacaataaaggacaaccagattgtt
cagtttcatccatcgacatgtctcgaccacacaccagagtgggttctttacaatgagttt
gtgttgaccgcagagaactatatcagaacagtgacagatgttaaaccagaatggatggta
caaattgctccccagtactataatataccaaacctccgaaattgcaaagccaaaagacaa
gtggaaagaatcatcgcaaaagtacaagccattggatatgaatag
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integrated database retrieval system
