Ruditapes philippinarum (Manila clam): 132721004 Help Entry 132721004         CDS       T09557                                  Name (RefSeq) 5'-3' exoribonuclease 2-like   KO K12619   5'-3' exoribonuclease 2 [EC:3.1.13.-] Organism rphi  Ruditapes philippinarum (Manila clam) Pathway rphi03008   Ribosome biogenesis in eukaryotes rphi03018   RNA degradation Brite KEGG Orthology (KO) [BR:rphi00001]  09120 Genetic Information Processing   09122 Translation    03008 Ribosome biogenesis in eukaryotes     132721004   09123 Folding, sorting and degradation    03018 RNA degradation     132721004  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:rphi03021]     132721004    03019 Messenger RNA biogenesis [BR:rphi03019]     132721004    03009 Ribosome biogenesis [BR:rphi03009]     132721004    03016 Transfer RNA biogenesis [BR:rphi03016]     132721004 Transcription machinery [BR:rphi03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      132721004 Messenger RNA biogenesis [BR:rphi03019]  Eukaryotic type   mRNA degradation factors    5'-3' decay     5' exonucleases      132721004 Ribosome biogenesis [BR:rphi03009]  Eukaryotic type   Pre-60S particles    RNases     132721004 Transfer RNA biogenesis [BR:rphi03016]  Eukaryotic type   tRNA degradation factors    Rapid tRNA decay (RTD) pathway factors     132721004 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  XRN_N XRN_M DUF5669 zf-CCHC_4 Motif Other DBs NCBI-GeneID:  132721004 NCBI-ProteinID:  XP_060561235 LinkDB All DBs Position Unknown AA seq 623 aa AA seqDB search MGVPAFFRWLSRKYPSIVVHCVEEKTREVNGVKFPVDSSQPNPNDTEFDNLYLDMNGIIH PCTHPEDKPAPKNEEEMMILIFEYIDRIFSIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR ASKEAVETAEEISRVREELLLKGCSVPPEKPASEKFDSNCITPGTPFMFRLANCLRFYIH DRLNNDAGWKGIKVILSDANVPGEGEHKIMDFIRKQRAQPDHDPNTKHCLCGADADLIML GLATHEPYFTIIREEFKPNKPRPCSLCGQIGHELKECQGIEKEKSGEFDQKAPVFADETP FIFLRLNILREYLERELQMNGLPFPYDFERALDDWVFMCFFVGNDFLPHLPSLEIREGAI DRLIKLYKNAVRRTGGYLTDSGVVALERVQLIMQELGEVEDEIFKKRRDDEMNFRRRNKE KRRRNRRFDDKPRYIPGGMLAPQPLGRGRPGVGAPTGNVRQEAYQQRMQNFSTSSSDRDL ANLDAAQALKAMMNSDNNERGEKRKRENMDSDSDPEPEDDVKLWEDGWKDRYYKNKFDVG SEDIAFRHNVANHYVRGLCWVLRYYYQGCASWKWYFPYHYAPFASDFVNVAALSNDFEKD TEPVSSRAVDCVTYMSRVTTKLT NT seq 1872 nt NT seq  +upstreamnt  +downstreamnt atgggagttccagcgttttttcgctggcttagtaggaaatacccatcgattgttgtacac tgtgtggaggaaaaaacaagagaggtgaatggcgtgaagtttcctgtagattcaagccag cctaatccgaatgatacagaatttgataatctctatctggatatgaatggaatcatacat ccctgtacccatccagaagataagccagctcctaaaaatgaagaagaaatgatgattctc atatttgagtacatagacagaatattttctattgtgcgaccaagacgggtgttgtatatg gcaatagatggcgtggctccgagggccaaaatgaatcagcagaggagtagaagattccgg gcttcaaaggaggcagttgagacagcagaagagatatcccgtgtcagagaagagttgtta ctaaaaggttgtagtgtccctccagaaaaaccagcttctgaaaagtttgacagcaactgt attacaccaggtacacccttcatgttccgacttgccaactgtcttcgattctacatccat gatagattaaacaatgacgctggctggaaaggtattaaggtaattctgtcagatgccaat gttccaggagagggggagcataaaatcatggactttattcgaaaacaaagagcacaacca gaccatgatccaaacactaagcactgtctctgtggggccgatgctgatttgatcatgtta ggtctggctacacatgaaccatactttaccatcatcagggaggagttcaagccaaataaa ccacgcccttgcagtctgtgtggtcagattggtcatgaactgaaggaatgtcagggaata gagaaggagaaaagtggcgagtttgaccagaaagcacccgtgtttgccgacgaaacacct ttcatatttctacgcctaaatatacttcgagaatatttagaaagagagcttcagatgaat ggcctgccatttccttacgacttcgagagagctttagacgactgggtatttatgtgtttc tttgttgggaatgatttcttaccacacttgccatctctagaaataagggaaggtgctata gacagattgataaagctgtataagaatgctgtcagaaggactgggggataccttacagac agtggtgttgtggccttggaaagagttcagcttattatgcaagaactgggagaggttgaa gatgaaattttcaagaagagacgtgatgatgagatgaatttccgcagacgaaacaaagaa aaacggcgtagaaatagaaggttcgatgacaaacctcgttatatccctgggggcatgctg gcgccacaacctttgggacgaggacgacccggtgtgggtgcacctacaggaaatgtgaga caagaagcatatcaacaaagaatgcaaaacttctccacatcctcgtctgacagagatttg gctaacttagatgcggcgcaggcgctcaaagcaatgatgaattctgataataacgagaga ggcgagaaacgtaaacgtgagaatatggacagtgacagtgatcctgaaccggaagatgat gtcaaattgtgggaagatggatggaaggacagatattacaagaacaaatttgacgtggga tctgaagatatagctttcagacataatgtggctaatcactatgtgagagggttatgttgg gttttacgttactactatcaaggctgtgcctcgtggaagtggtatttcccctatcattac gcaccttttgcttccgattttgtcaatgttgctgccttgtcgaacgattttgagaaggat accgagccagtaagtagtcgagccgtagattgtgtaacatacatgagccgggtcacaaca aaactgacataa

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