Ruditapes philippinarum (Manila clam): 132721084
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Entry
132721084 CDS
T09557
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71-like
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132721084
04121 Ubiquitin system [BR:
rphi04121
]
132721084
Enzymes [BR:
rphi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
132721084
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132721084
Ubiquitin system [BR:
rphi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
132721084
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_2
ANCHR-like_BBOX
zf-RING_5
DUF5711
Invasin_D3
Neurexophilin
Motif
Other DBs
NCBI-GeneID:
132721084
NCBI-ProteinID:
XP_060561316
LinkDB
All DBs
Position
Unknown
AA seq
769 aa
AA seq
DB search
MASISDQIGDLGELGACPICRRIYQDPRVLPCLHSFCKRCLERYHQENGSSETLKCPSCH
QEASLNSGGIEGIPSSIFISNILDVMVSQDDYENGELENDHQNHWCNSCDEGSRATSVCK
NCHEYLCESCVKAHQRVRLTKDHYIERFGNHRYRPQNITPCMPSPIISAAQGDRQQTPCS
KHEQEILRLYCDTCLSPICRECTMTEHVGHSFIYLQDAIDDSRTVTVKLLADAKAGMKAI
EESLQVTQGMAERVEVRSQSVATEIRNITRRHMLALEERERDLLRRVEKIRQVKGKSLHM
QMDDLKQGLMSLSRTVENVETVLNTGREIDVLKTKESMVSEIQKLRSLRGHLQPHEDDNI
LFTPPDAALHVAITKLGFISSSAYASNCIAVGDGLKRALKGKVAIFVIQAKDHLGEQRVV
GGDPVECVIQSPEGALYRTEVIDRQNGTYSVTYRPQIEGQHAISVMINGKHIHDSPFSVS
VRSGRNYAAVGTMITQFGGEGEEEGKLCRPWGICYHKEGFILVADRSNNRVQAFNPDGTY
HHHFGSAGTRNGQFDRPAGVATDSQGRVIVADKDNHRIQVFTVEGNFILKFGEKGNKNGQ
FNYPWDVAVNSEGKILVSDTRNHRVQLFTCDGLFINKYGFDGALWKHFDSPRGVCFNNEG
QMVVTDFNNHRLLVIHPDFHNARFLGTEGSANGQFLRPQGVVVDQEGNIIVADSRNHRIQ
VFQPNGNFLCKFGAPGSGPGQLDRPSGICVTPEGHVLVVDFGNNRVQVF
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggccagtatatcagatcagataggggacttgggtgagcttggggcatgtccaatatgt
cgtagaatatatcaggatcccagagttcttccatgtttacattctttttgtaaaagatgt
ttagaaaggtaccatcaggaaaatgggtcatcagaaacgttaaaatgtccgtcatgccac
caagaagcgtcattaaattccggtgggatagaaggtatcccgtcaagcatattcatttca
aacattttggatgtgatggtatcacaggacgactatgagaatggtgaactagaaaatgac
catcagaaccactggtgtaattcatgtgatgaaggaagccgtgcaacgtctgtttgtaaa
aattgccatgagtacctctgtgaaagttgtgtgaaagcacatcagcgtgtaagattaacc
aaggaccactacattgaaagatttggaaatcacagatacagacctcagaatattacgcca
tgtatgccctctccaataatttctgctgcccaaggtgatcgtcagcaaactccttgttca
aaacatgagcaagagatccttcgtctttattgcgatacttgtctatcccctatctgtcga
gaatgcaccatgactgagcatgtaggtcatagttttatctacctccaagatgccatcgat
gattctcgcactgtgacagtcaaactgcttgcagatgcgaaagctggcatgaaagctatt
gaagaaagtctacaagtcactcagggtatggctgaacgtgtcgaagttagatctcagtct
gttgccacagagatccgcaacataacaaggcgtcacatgctagctttagaagagagagaa
agagacttgttaagaagagttgagaaaatacgacaggtcaaagggaaatctcttcatatg
caaatggacgacttaaaacaaggtttaatgtcattgagcagaactgtagaaaatgttgaa
actgtgttaaacacaggacgtgaaattgatgtcctgaaaaccaaagaaagtatggtcagt
gaaatacaaaagcttcgttccttacgtggacatttacaacctcatgaagacgacaatatt
ttgttcacaccaccagatgcagcccttcatgttgccatcacaaagcttggctttattagc
agtagtgcttatgcatcaaattgtattgctgttggagatggtcttaaaagagccctgaaa
gggaaagtagccatatttgtcatacaagcaaaagatcatttaggagaacaaagagttgtt
ggaggtgacccagttgagtgtgtcatacaaagtccagaaggtgctctataccgtacagag
gtcattgacagacagaatgggacatacagtgtaacataccgaccccagattgaaggacag
catgctatttctgtgatgatcaatggaaaacatatacatgacagccctttctctgtctcg
gttagaagcggaagaaattacgctgctgttgggacaatgataacacagtttggtggagaa
ggtgaagaagaggggaagttgtgtaggccatggggaatctgttatcataaagaagggttt
attcttgttgctgatcgtagcaacaatagggtccaggctttcaacccggacggtacatat
catcatcattttggatcagcggggacgcgtaacggacagtttgatcggcctgctggagta
gccacggatagtcaagggcgtgtgatagtagctgataaagataatcatcgtatccaggta
tttacagtcgagggaaatttcatattgaaatttggtgaaaaagggaataaaaatggtcag
tttaattatccatgggatgtagctgttaattcagaaggcaaaattcttgtgtcagataca
cgtaatcatcgtgtacagttatttacatgtgatggtttgttcattaacaaatatggattt
gacggtgctttgtggaagcattttgattcacctcgtggagtgtgtttcaacaatgaaggt
cagatggttgtaacagacttcaacaaccataggcttcttgtaattcacccagatttccac
aatgctagatttctgggtacagagggaagtgcgaacggccagtttttgcgaccacagggc
gtcgtagttgatcaagaaggcaatattatagttgccgattcacgcaaccatagaattcag
gtttttcaaccaaacgggaacttcctgtgcaagtttggcgcgccaggttcgggtcctggt
cagcttgatcgaccttcaggtatatgtgtaacacctgaaggtcatgttcttgttgttgat
tttggtaataatcgtgtacaagtattttaa
DBGET
integrated database retrieval system
