Ruditapes philippinarum (Manila clam): 132721254
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Entry
132721254 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132721254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphi03021
]
132721254
03036 Chromosome and associated proteins [BR:
rphi03036
]
132721254
Transcription machinery [BR:
rphi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
132721254
Coactivators
SAGA/TFTC/STAGA complex
132721254
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
132721254
STAGA complex
132721254
TFTC complex
132721254
SAGA complex
132721254
SLIK complex
132721254
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_IFT122_1st
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
TFIID_NTD2
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_VPS8
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
DSE1_N
NBCH_WD40
PAC11
Beta-prop_Vps41
Beta-prop_IFT140_1st
CFAP251_N
ASA1
Beta-prop_HPS5
Beta-prop_WDR41
eIF2A
Beta-prop_DCAF4
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_NOL10_N
Beta-prop_SPT8
Beta-prop_WDR19_1st
WD40_like
Tricorn_2nd
WD_LRWD1
Beta-prop_ACSF4
Cytochrom_D1
TRM82_WD
LisH_TPL
LisH
LisH_PAC1
Motif
Other DBs
NCBI-GeneID:
132721254
NCBI-ProteinID:
XP_060561519
LinkDB
All DBs
Position
Unknown
AA seq
677 aa
AA seq
DB search
MASNFNQIASGNNFPAGGEIKSENKTDVSDKQTLLAVLQFLKKNNLKGTEELLKKETGLD
DADVKPDTTGQSASEVSHALAAYKSDDDPSLYDDHYTNFKVFIESCLDVHKVEASHYLYP
VFVHMYLELVYNGHEEQAVKFFVKFSLDQEEYYVEDLNKLSTVTKAEHMKGSQLMENFKS
SKFVLKMSRDSYTHLKRYLQEKQLNLLLNIIQEHLFIDVFDGIPRTKQQIDMTSGGLLGE
AAREANKTKIFYGLLKEPDINIPADDEDEGGGDGEDKPKKKKQKKDPLMMKKARNDPNAP
ASTRIPMPELKDYDKMEKINAYREALKRVKIGPNSPPSICFYTFHNAVQGLTSVEISEDS
SLMCTGFGDSNIKIWSLTPNKLRSMKQLESLEIIDKESDDVLERMMDERTSEDTKLLVGH
SGPVYSTSFSPDRSYLTSCSEDGTVRLWSLQTWTNLVSYKGHNAPVWDVKFSPHGHYFVS
GGNDRVARLWTTDHYQPIRIFGGHFSDVDSVQFHPNGNYVATGSSDRTVRIFDVLNGSCV
RTLTGHKGAVHSLCFSPDGKYLASSGLDGNICLWDVSNGNMLAQMRDHTSTVYSLSFSRC
GAVLASGGLDNCVKLWDVTKVIKEMDKDMDASIPSSLSVNESPNLLIGSFATKATPVLSI
HFTRKNLLLAAGPMKVS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgaatttcaatcaaattgcttccggtaacaattttcctgccggcggtgagatt
aaatcggaaaataaaacggacgtatcggataaacaaacacttcttgcagttctacaattc
ttgaagaagaataatcttaaaggcacagaagagttgttgaagaaggagactggtttagat
gatgcagatgttaaaccggatacaactggtcaatcagcatcggaggtttcacatgccttg
gctgcatataagagtgatgatgaccccagtttatatgatgatcattacacaaacttcaaa
gttttcatagagtcatgcctcgatgtacataaggtagaggctagccactatctgtaccct
gtatttgtacacatgtatttagagctggtatacaatggacatgaggagcaagctgtgaaa
ttttttgtgaaattttcattggatcaagaggagtattatgtcgaagatttgaacaagtta
tccacagtgacaaaagccgagcatatgaaagggagtcaactcatggagaattttaagtcc
agtaaatttgtgctgaaaatgtctcgtgactcttacacacatttgaagagatatctacaa
gaaaagcaactcaacctgttactcaacattattcaagagcacttgtttattgatgtgttt
gatggtataccaagaacaaagcagcagatagatatgacaagtgggggattgctgggagaa
gctgcaagagaagccaataagacaaagatattttatggattactgaaggaaccagatata
aatataccggctgatgacgaggatgaaggtggaggtgatggtgaagataaaccaaagaaa
aagaagcagaagaaagacccactgatgatgaagaaagcaagaaatgacccaaatgctcct
gcatctaccagaatacccatgcctgaattgaaggactatgataaaatggagaagattaat
gcatacagagaggccctaaagagggtgaaaataggacccaattctccgccttctatatgc
ttctacacatttcataatgctgtacagggtttaacatccgttgaaatatctgaagactcc
agtctgatgtgcacagggtttggagactcaaacatcaagatctggtcacttacgccaaat
aaactccgaagtatgaagcaattagagagtttggaaatcatcgataaggaatcagatgac
gtattggagagaatgatggatgagcgaacatctgaagatacaaaactgttggtaggacac
agcgggccggtttacagcacaagcttctctccagatagaagctacctcacatcctgttcc
gaagatggcacagtacggttatggagcctgcagacgtggacaaatttagtgtcgtacaaa
ggtcacaacgcgccagtttgggatgtgaaattcagtccacatggtcattattttgtatca
ggtggaaatgacagggttgctagactttggacaacagatcactaccagcctatccgaata
tttgggggacatttttcagatgttgacagtgtgcaatttcatcccaatggtaactatgtc
gccacagggtccagtgacagaactgtaaggatattcgacgtcctgaatgggtcttgtgta
agaacacttactggacataagggggcagtgcatagtctatgtttctcaccagatggcaaa
tacttggcatcgtcaggcttagatggaaatatttgcttgtgggatgtgtcgaatggcaat
atgttggcacagatgagggaccatacaagtactgtttactcacttagctttagtcgttgt
ggagctgtcctggcttcaggaggattagataactgtgtcaagctgtgggatgttacaaaa
gtcatcaaagaaatggataaagacatggacgctagtataccaagttccctctctgttaac
gagagtccgaatcttctgattggctcatttgccacaaaggccacgcctgtattatctata
cacttcacgaggaagaatcttctcctagctgcaggaccaatgaaagtatcatga
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