Ruditapes philippinarum (Manila clam): 132721376
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Entry
132721376 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphi03021
]
132721376
03036 Chromosome and associated proteins [BR:
rphi03036
]
132721376
Transcription machinery [BR:
rphi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
132721376
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
132721376
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
HHH_9
Tex_YqgF
HHH_3
Tex_N
SR-25
Motif
Other DBs
NCBI-GeneID:
132721376
NCBI-ProteinID:
XP_060561651
LinkDB
All DBs
Position
Unknown
AA seq
1725 aa
AA seq
DB search
MSDFFEDEAEVSGESSEEGSVLGSSRSGSGSGSGSGSDAGSDVSGGARKKKLKKKKDIKK
KKKKILSDDEDEDEEEEIDEAAIAEEMKDFINEDDDVEEEGEDEEEGGGEKRKHESEEEE
DDQLEDEDYDLIEENLGIKVQRAKKLKRIKRVISDDEDSEKEEETEGQAQERIANELFEG
DDDVEEDDDDARSRMTRAETEARDLAVEGSDEEDELDDFIVDDQGQPIGGRKKKKHIIHS
DALLQEAQDIFGVDFDYDEFKDYGDEEEEEEEEDEYLDEDELEGEEGGERKVKKKRPKGA
SKASSTYEPEALSRAFMTEQDSVIRSTDMPERFQLRQVPVKETEEGELEEEAEWIYKQAF
NTPPVSTQTFLDQESGGSYGFSKKGPSMVEKIKKAVDFMRNKHHEVPFIAFYRKEYVEPD
LNINDLWRVWHWDERWTQLRTRKQNLIRLFERMQNYQYEVNSDPDKVLESNIRTLTEEDI
DRVKKVETMEELRDVYNHFLLYYGSDIPKMRNLEKVKRREEKNEERGEDEPREDDDDHDQ
VKQASRKSGYTICVKNKLDEIALRFGLTPEQFGENLRDNYQRHDVDQCPMEPLELAADYV
AGQFPTADEAMLGARHMVAMQLSHDPLVRQCVRTAYFERARIHVGPTKKGQKVVDESHPC
YPLKYLKNKPVRDLKDEQFLRLTDAEADQILSIKITMDEDTDNPNIQTYYEEIRQLYYRD
EFSHLVQQWNIQRSQALERALTKILYPQLEKELRLKLIQEAKEGILKACCRKLYNWLKVA
PYQAEQQMEDDYDFVDNEQGVRVLGIAYINEQDTTSFGCMVNGEGEVTDYIRLPYLKNRT
RTQREKEREEKEKDMEKLKDFIETKKPHVIAVTAENIDALMIVDDIKKVIAELEQEAQMP
PISVELVDNELAMVYANSARGDEEFREYPPVLRHAVCVARRLQDPLIEFAQLCNQDEDIL
CLKYHPLQDTLAKEDLLNALHLEFVNRVNEVGVDVNRAIANSHTGVLVQFICGLGPRKGA
ALLRTLRQNSYRLENRTHLVTLCRMGPKVFINCAGFIKIDTNSLGDSTEAYVEVLDGSRV
HPEYYEWARKMAVDALEYDDTAEDANPAGALEEILESPERLKDLDLDAFAEELERQGYGD
KHITLYDIRAELNHRYKDLRTPYRSPTNEERFNMISKETPDTFYIGKLLMVRVTGIAHRK
PHGEQLDQADPVRNEETGLWQCPFCNKNDFPELSEGTKATIYVNSKFQMRIFVTIYILQV
GMMVHSRIIKIDIDRFTVDLTTKSSDLIDKENQWKPQKDLYYDMDREKNESEHEEEKKKI
QARQSYIKRVIAHPNFHNIGYKECEKILSNMDQGECIIRPRQXVYKGXXHCLLTWKVAEG
VLHHIDIKEEGKENAFSLGSSLLIGGEEFEDLDEIIARYIQPIASHARDIINFKNYLDSD
CGKKEILEKKLYEDKKKAPSRIPYYLSSTKQYPGKFLLSYMPRTKPRHEYVTVTIEGFRY
RHKTFHSINSMMRWFKEHFRDPLVGTPSHRTPVGQTPNFSLQGVDAATIQRAAAGLPSNI
YNTLAQVAGVTPAGVTPGVTPRVTPGFTPGFTPRTGFTPHTPQVGGSSSSNFAGGFSGGL
NYRPQNQVGSTPMMTPAGQATPSYQPTPKSQWPGATPRTPRSSGQSSSGAKPGGSAGTDW
AKAAEMWAKHKKMAPGTPRSPAVRPSPRRVEQSPAGDATPLFDER
NT seq
5178 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacttctttgaagatgaggctgaagtgtcgggggaatccagtgaggaaggatca
gtgttgggttccagtcgatcaggatcaggctctgggtcaggttctggttcagatgcagga
tcagatgtgtcgggtggggctaggaagaagaaattgaaaaaaaagaaagatattaagaag
aagaaaaagaaaattctgtccgatgatgaagacgaggatgaggaagaagaaatagatgag
gcagcaatagcagaagagatgaaagactttataaatgaagatgatgatgttgaagaagaa
ggagaagatgaagaggaaggtggtggtgagaaacgtaaacatgagtcggaggaagaagaa
gacgatcaactagaggatgaggactacgatcttattgaagaaaacctgggaattaaagtg
cagagagcaaagaagttaaaacgtatcaagcgtgtaatatcagatgatgaagatagtgaa
aaagaggaggagacagagggtcaggcacaagaaagaattgctaatgaattatttgagggt
gacgatgatgtggaggaagatgatgacgatgctagatcgagaatgacgagggctgagact
gaggctagagatcttgctgtagagggctcagatgaggaggatgagctggatgattttatt
gtggatgatcaaggtcaaccaattggtggcaggaagaagaagaaacacatcattcattct
gatgcattgttacaagaagctcaggatatatttggtgtagattttgactatgatgagttc
aaagattatggtgacgaggaggaggaggaagaagaagaagatgaatatttggacgaggat
gaattggaaggagaggagggcggagaaagaaaagtaaaaaagaaacgtccaaaaggtgcc
agcaaagcctcttcaacatacgagccagaagcattgtcgagggctttcatgacagaacag
gacagtgttataagaagtacagatatgccagagagatttcagcttcgtcaggtaccagtg
aaagagaccgaggaaggtgaactagaggaggaggctgagtggatatataaacaagctttc
aatacacctcctgtctctacacagacatttcttgatcaagagtctggaggtagctatggt
ttcagtaagaaaggcccaagtatggtagaaaagataaagaaagctgtagactttatgagg
aataaacatcatgaagtaccattcatagctttctacagaaaggagtatgtggaaccagat
ctaaatatcaatgatttatggagggtttggcactgggatgaaagatggacacaacttcgc
actagaaaacaaaacttgatacgcttgtttgagaggatgcagaattatcagtatgaggtg
aactctgacccagataaagttctcgagagtaatattcggacattgacggaggaagatatt
gacagagtaaagaaagtggaaacaatggaggagttacgagacgtgtataaccattttctc
ttgtactacggttcggatattcccaagatgcgtaatttagagaaagtgaagcgtcgggaa
gagaaaaacgaggagcgaggggaggacgagcctcgggaagatgatgatgaccatgatcaa
gtgaaacaagcttctagaaagtctggatacacgatttgtgtgaaaaataaacttgatgaa
atagcactaaggtttggattaacaccagaacagtttggtgagaatctacgtgataattac
cagagacacgatgtagatcagtgtccgatggaaccactagaattggctgctgattatgta
gcagggcaattcccaacagcagatgaagctatgctaggtgctcgtcacatggttgccatg
caactgtcacatgatccccttgttagacagtgtgtgagaacagcttactttgagagagcc
aggattcatgttggtcctacgaagaagggacagaaggtagtagatgagtctcatccttgt
tatccactgaaatacttgaagaataagccagtgagggacttgaaggatgaacagtttctg
agattgacagatgcagaggctgaccagattttatcaatcaagatcacaatggacgaggac
acagataatccaaacatacagacttactacgaggaaatcagacagttatattacagggat
gagtttagtcatcttgtacagcagtggaacatacagagaagtcaggccttggaaagagct
ctgacaaaaatactttacccacagctggagaaagaacttcgccttaaacttatacaggag
gctaaagagggaattcttaaagcttgttgtagaaagttatataactggttaaaggtggca
ccataccaggccgaacaacagatggaggatgattatgattttgttgataatgaacaaggt
gtaagagtgcttggtattgcctatatcaatgaacaagacacaacatcatttggatgtatg
gttaatggggaaggggaggtaactgactatatcagacttccatacctgaaaaatcgaaca
agaacacagagggagaaagagagagaagaaaaggagaaagatatggagaaattaaaggat
tttattgagaccaagaaaccccatgtcatagctgttactgcagaaaatattgatgcgttg
atgatagtagatgatataaagaaggtgatagcagaattagaacaagaggctcagatgcca
cctatcagtgttgagttggtagataacgaacttgccatggtgtatgccaacagtgccaga
ggtgatgaggagtttagagagtatccaccagtgttacgacatgcagtatgtgtggctaga
agattacaggatcctctgatagagtttgcccagttatgtaatcaagatgaggacattctc
tgtctcaaatatcatcctctacaggatactttagccaaggaggacttgttaaatgcttta
catttagagtttgtcaacagagtaaatgaagttggtgtagatgtaaacagagcaatagcc
aacagtcatactggagtacttgtgcaatttatctgtgggctcggacccaggaaaggagct
gctctgcttaggacattaagacagaacagttaccgtttggagaatagaacccatcttgtc
acactgtgtagaatgggtcctaaagtgttcataaactgtgctggtttcatcaagattgat
acaaactctcttggagacagtacggaagcatatgttgaagtgttggacggatctcgtgta
catcccgaatattatgagtgggccaggaagatggctgttgacgcattggaatatgatgac
acggctgaagatgccaacccagctggtgctctcgaagaaatcttagagagccctgaacgt
ttgaaagatcttgatttagatgcttttgcagaagaattggagagacagggatatggagac
aaacatatcacattgtatgatataagagcagaattaaatcacagatacaaggatctgaga
acaccatacagatctccaaccaatgaggaaaggtttaacatgatctccaaggaaacccca
gacacattctatattggtaaattattgatggtacgtgtcactggtattgctcatagaaag
cctcatggtgaacaattagatcaggcagatcccgtcaggaatgaggagactggattgtgg
cagtgtccattctgtaataaaaatgacttccctgaactcagtgagggcactaaggcgaca
atatatgtaaatagtaagtttcaaatgaggatttttgtaaccatatatatattgcaggtt
ggaatgatggtacattcaagaattataaagattgatattgacagatttacagtagatctt
acaaccaaatcatctgatctcatagataaagagaaccaatggaaaccacaaaaagactta
tattatgatatggatagagagaagaatgaatcagaacatgaagaagagaagaagaaaata
caagctagacaatcatacattaagagagttattgctcaccctaactttcacaatattggt
tacaaggaatgtgagaagattttatctaacatggaccagggtgaatgtattatacgtccc
aggcagtaagtgtataaaggttgataacattgtcttttgacctggaaggtggctgaagga
gtcttacatcatatagatatcaaagaggaaggcaaggaaaatgcattcagtttgggatca
tcgttgttgatagggggagaagaatttgaagatttggatgaaatcattgcacgttacatt
cagccaatagcatcacatgctcgagatatcatcaactttaaaaactacctggactctgac
tgtggtaaaaaggaaattctggaaaagaaattatatgaagataagaagaaggcaccatct
agaataccatattatttgagctcaactaaacagtacccaggtaaatttctgctgtcctat
atgcctcgaacaaaaccacgtcatgaatatgtcaccgtgacgatagaagggttccggtat
agacataaaactttccactcaataaactcaatgatgagatggttcaaggaacatttccga
gacccgttggttggcacgcccagtcacaggacacctgtcggacaaacaccaaatttcagt
ctacaaggtgtggatgcagctactattcagagagcagcagcaggtttacctagcaatatc
tacaacaccctggcccaggtggctggtgtgacgcctgcaggggttacccccggagttaca
cccagagttacacctggattcacgccaggtttcacaccaaggaccggcttcactccacat
actccacaggttggaggatcctctagtagcaactttgctggtggttttagtggaggatta
aattataggcctcaaaaccaagtgggttctacaccaatgatgaccccagctggtcaggca
accccgtcatatcaaccaacccccaaatctcagtggccaggtgccacacctagaacccct
agaagtagtggtcaatcttcatcaggtgctaaaccaggaggtagtgcaggcacagattgg
gccaaggcggccgaaatgtgggccaaacataaaaagatggcaccaggtacgccacgtagt
ccagctgtacgaccatctccacgacgtgtggaacagtccccagctggagatgccacacca
ttgtttgacgagagataa
DBGET
integrated database retrieval system
