Ruditapes philippinarum (Manila clam): 132721509
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Entry
132721509 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 1-like
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03008
Ribosome biogenesis in eukaryotes
rphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
132721509
09123 Folding, sorting and degradation
03018 RNA degradation
132721509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132721509
03009 Ribosome biogenesis [BR:
rphi03009
]
132721509
03016 Transfer RNA biogenesis [BR:
rphi03016
]
132721509
03036 Chromosome and associated proteins [BR:
rphi03036
]
132721509
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
132721509
mRNA degradation factors
5'-3' decay
5' exonucleases
132721509
Ribosome biogenesis [BR:
rphi03009
]
Eukaryotic type
Pre-60S particles
RNases
132721509
Transfer RNA biogenesis [BR:
rphi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
132721509
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
132721509
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
SpoIIE_N
dsrm
LIX1
DUF6364
Motif
Other DBs
NCBI-GeneID:
132721509
NCBI-ProteinID:
XP_060561811
LinkDB
All DBs
Position
Unknown
AA seq
1967 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEFQIPEFDNLYLDMNGIVHVCSHPEDDNPHFRITEEKI
FADIMYYIEFLFRMIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAREAEELEKRAMQKGE
TLPTEKRFDSNCITPGTPFMVRLQEQLKYFVVKKTSTDPLWQGVRVYLSGHETPGEGEHK
IMDFIRAERSDVNYDANTRHCLYGLDADLMMLGLASHEPHFSLLREEVRFGGRKDSRNKR
PQTPEETTFHLLHLSLFREYLDFEFSTLKNELTTFEYNLENVIDDWVMMGFLVGNDFIPH
LPNLHINHDALPLLWRTYIEVLPSCGGYINEGGHLNLERFEKYLTALSKFDFDTFSEQVG
DLKWLESKKAEASAGQAEALSAARKLAKNQKKSLSRLTERLERNQFALLESLDDNVVSSD
ELGTELIDSPVDETSEEISEDVSDESDDDTLGDEFRHHKRNYYMTKMEYEKVTPEVLQDQ
AEGYVRGIQWILLYYYEGVPSWSWYYQHHYAPYMSDVKDFKNMNLRFDLGTPFKPFEQLM
AVLPAASKDLLPLPYQKLMINDTSPVIDFYPLQFDTDLNGKQQDWEAVVLIPFIDENRLL
TAIRSVEHLLTDEEKARNGHGPHLCYEYTPEAGEPYPSPLPDFPDIAISHSKLTRVHMDE
FRIPSELLRKGMLPGAKLDVFFPGFPTLKHIPHHAELSKEGVKVFQMNSRGYNTMLYIEQ
GEEEPDIDKVAKEYLGREIYVGWPHMYEAKVIAVSNSEYSYTQEEPAGGKGKAGNHRPQI
KREQIDDSTYTIYSKEISTIVERYKDRLGIVIGDTHILLRALPMTGRKYIFSSHGRVTMD
KQFGKLPVAFAKQATVKDIAVHDSGFCQFRTLKDYLPEGTAVFMLGWPHYACQGEVIETD
TDSGRVRINLSILEEPQLSNVINHQQIHPSMVHADRYYSGYVVAQKVGISSHLLSRLTGT
IYVTAGEAELAREQANPHKVNVGLNLKFTKRGEEVPGYTKNNEGQWTYSDKVVDVLSQYM
DKFPEMFESISKSNKQHNDMYYESDLIPKTCDYTLKTVEEFIKKLPCSGLKTMKSGADII
SEGTIKALQELTDQVVEANKKRQKRVKMQVKPHLLYKPSPTSGSLIPDQSAMYQLYDRVV
NTRQGFPVPFGLRGTVVGIHPAEVEVNTMYEVIFDDDFQGGISIRNSSKRGYRMPPSGLL
NITHGERKNGVKSAIQIPVAAKNQPYQGQQHRNVTNDFSYANASAPRQPGPHQYNQGYGG
QQGFQRNQGGYQGLPDNRTGYHDNQYSRGGNQQWDRQGRSGNQAGYSRQNDQYEKQNNRN
TQDTKEDVSGQVFNGASAGTSQPTFVTPKVTSGNQSKRKLSTGESQQNKPGKGQTSGSTE
FDNIWKQLQASQPPAADNSSQGLSLSSAAAVLPRVPSPDNASKGSNSNQNNTKIDVQSLF
SGASNANDTKTIQPGAQNAKSDSKSQYSSSKVVSNDEFAAMFKSLEEVHISKEENENKPE
NGTDALKKMLNITDQSESSKNSDPPADSGGASSGGGKSYGRQVSIQELFDGAKKQQVQSD
VDKSQEQQNKGKGYQKQKGQGQQSPRQPQGHQGQQQGFQNNVQNKRPALLIPQSRGGNRN
PVMELMSFCQSLQMGLPMYDYLPKSGVFYCVVSLFNGARFQGSLCKTKEEAAESAASVAL
LQLKGSMQQMAAHPMMQMPGFVPGALPQGRQFSSPNSAFSPVNTFTAPGIYQGNRGQSPR
GYHGYGQQQQQRPFSGGQGQTHYNRGGYSRQQNNSANQQQGRNQTYQNPQEMTTSQQQGR
NQTYQNPQEVIANQNQESKTDERSLFNSQKQSKDVKTQPTCVVTPFVPMQVTRKHTPQKA
RKTSVSDDNTSRIEEETLEKRGENVPVREVKGDNSMQSNKPKTDSSETISSKPDPNNSRT
ERKESGSTDSTSPKTKQSTPPKSAKKTETGSAKKSRRRLAANFNVKP
NT seq
5904 nt
NT seq
+upstream
nt +downstream
nt
atgggggttccgaagttttacagatggatttctgaaagatatccatgtctttcagaagtt
gtaaaggaatttcagataccagaatttgacaatctgtacctggacatgaatggtattgta
cacgtctgttcccatccggaagatgataatccacatttcaggattacagaagagaagata
tttgctgatatcatgtattacattgagttcctgtttcgaatgatcaaaccaaggaaagta
ttcttcatggctgttgatggtgtagcaccacgcgcaaagatgaaccaacaaagaggcagg
agattcaggtctgcgagggaggcggaagagctagaaaaacgtgccatgcagaagggggag
accctaccaactgagaaacgatttgactccaactgtattacaccaggaacaccgtttatg
gtacggctacaagaacagttaaagtattttgttgtaaagaagacaagtactgaccccctg
tggcaaggtgtgagggtctatctctccgggcatgaaacgccaggggaaggagagcacaag
attatggattttattcgagccgaacgatcagatgttaactacgatgcaaacacaagacat
tgtctgtacggactggatgcagatctgatgatgttgggcctggcatcacatgagcctcat
ttttctctgctccgagaagaggtgagatttggtggtagaaaagacagtcgaaataaaagg
ccacaaacaccagaggagaccactttccacctgttacatttgtctttgtttagagagtat
ttggattttgaattttctactctaaagaatgaactaaccacatttgaatataacctggag
aatgtgatagacgattgggtaatgatgggattcctggtgggcaatgactttataccacac
ctacctaatttgcatattaaccatgatgcattgccacttctgtggaggacatatatagaa
gtactaccctcatgtggaggttacataaatgaaggtggtcatctgaatctggagagattt
gaaaaatacctcacagctttatcaaagtttgattttgacacattctccgagcaagttggt
gacttgaaatggttggaatcaaagaaagcagaagcctcggccgggcaagcagaagcttta
tctgcagcaaggaaacttgctaaaaaccagaaaaaatcactaagcaggttaacagagcgt
ttagagaggaaccagtttgctctcctggaatcattagatgacaatgtagtgtcatcagac
gagctaggtaccgagttgatagattctccagttgatgaaacttcagaagagatatcggag
gacgtgtctgatgaatctgacgatgacacgttgggcgacgagttccgtcatcataaacgt
aactactacatgacaaagatggagtatgaaaaagtgacgcctgaagttctacaagaccaa
gcagaaggctacgttagagggatacagtggattttactctactattatgaaggtgtacca
tcatggagttggtattatcaacaccattatgcaccatacatgagtgatgtgaaggatttc
aaaaatatgaacttaaggtttgaccttggcactccatttaaaccgtttgaacaactgatg
gcagttttacctgctgccagtaaagatttattacctcttccatatcaaaaactgatgatc
aatgacacatcacctgtgatagatttttacccgctacagtttgacacagatctgaatggg
aaacaacaagactgggaagctgttgttctcatcccttttatagatgagaatcgactactc
acagcaattcgatctgtagagcatcttcttacggatgaggagaaggcacgtaatggtcat
ggtccgcacctgtgttacgaatatacaccggaagctggcgagccatatccctcgccttta
ccagatttcccggacattgctatcagtcattccaagctgacacgggttcatatggatgag
tttcgtattccaagcgaattactgagaaaaggaatgctgccaggagccaaattagacgtt
ttcttcccaggattccctacattgaaacatattccacatcatgctgagttaagtaaagag
ggggtaaaggtgttccagatgaacagtcgagggtataataccatgttgtacattgaacaa
ggagaggaggaacctgacatagacaaagtggcaaaggaatatcttggaagagaaatctat
gttggttggccacatatgtatgaggctaaagttattgcagtcagtaacagtgaatacagt
tacacacaagaggaaccagctggcggtaaaggtaaagctgggaaccatcgaccacagatc
aaaagagaacagattgatgacagtacttatacaatatactcaaaggaaatcagcactatt
gttgaaaggtataaagacagacttggaatagtcattggtgacacacacattttactgagg
gccttacctatgactggcagaaagtatatattcagttctcacggcagagttactatggat
aaacagtttggaaagttacctgtggcatttgctaaacaagccactgttaaggatatagct
gtacatgattctggtttctgtcagttccgcacattaaaggactatcttcctgagggaact
gctgtatttatgcttggttggccacattacgcatgccaaggggaggtaatagagacagat
acagacagtgggcgtgtccgtatcaacctgtccatcttagaggaaccgcagctctccaat
gtcattaatcatcaacagatacatccatcaatggtgcatgctgaccgttactattccggt
tacgttgttgcgcagaaggtcggcataagttcgcacctgttgtcacggttgaccggcaca
atttatgtgacagctggggaggcagagctagctcgtgaacaggccaatccacataaagtt
aatgtaggactgaatctgaagtttactaaaagaggcgaggaagttcctgggtatactaaa
aacaacgaagggcagtggacgtattcagataaagttgtcgatgttttgtcccaatatatg
gataagtttccagagatgtttgagagtatttccaaatcaaacaagcagcataatgatatg
tactatgaatctgatctcatacctaagacatgcgattacactttaaaaactgttgaagag
tttataaagaagttgccatgctctgggttgaaaactatgaaatcaggggctgatattatt
agtgaaggaactataaaagcattgcaggaactgacagaccaagttgtagaggcaaacaag
aaaagacaaaaaagagtgaaaatgcaagttaagcctcatctactttataagccgtcgcct
acgagcgggtctctgatcccggatcagtctgccatgtaccagctctatgacagagttgtt
aatacaagacagggatttccggtgccgtttggtttgcgggggacagttgtgggaatacat
ccggcagaggtcgaggtcaatacaatgtatgaggtgatctttgatgacgattttcaggga
ggaatttctataagaaattcatcaaagagaggttacagaatgccaccatcgggattgttg
aatataacacatggtgaacgtaaaaatggtgtcaaatctgccatacaaattcctgtagca
gccaagaaccagccataccagggccagcaacatagaaatgttaccaatgattttagttat
gctaatgccagtgccccgagacaaccagggcctcaccagtataatcaaggttatggaggg
caacaaggttttcaaagaaatcaaggtggttaccaaggactacctgataacagaacaggt
taccatgacaaccagtattccaggggaggtaatcaacaatgggacaggcagggtagatca
ggaaatcaggctggctattcgagacagaatgatcaatacgagaagcaaaataatagaaat
acacaggatacgaaggaagatgtatcaggacaagtgtttaatggagccagtgctggaacc
agccaaccaacatttgtcactcctaaagtcacttcagggaaccagtcaaaaaggaagttg
tccacaggagagtcccagcagaataaacctgggaaagggcagactagtggaagtacagaa
tttgacaacatatggaaacagttacaggcatctcaaccaccagcagcagataactctagt
caaggactgtcactctcatcagcagctgcagtattgccaagagtgccttcccctgataat
gccagtaagggaagcaactctaatcaaaataatactaaaattgatgtacaaagcttgttt
tctggagcaagcaatgcaaatgacactaaaaccattcagccaggtgctcagaatgctaaa
tcagacagtaaatcacagtatagtagttctaaagtagtgtctaacgatgaatttgcagcc
atgtttaaatctcttgaagaagttcacatatctaaagaagaaaatgaaaataaaccagag
aatggcacagatgcactaaagaagatgctaaatataactgaccaatcagaatccagcaag
aattcggaccctcctgcagatagtgggggagcaagtagtggaggtgggaagagttatgga
agacaagtttctattcaggaattgtttgatggtgccaagaagcagcaggttcagtctgat
gtagataaatcacaggaacaacaaaacaaaggaaaggggtaccagaaacagaagggtcaa
ggtcaacagtcaccaaggcaaccacaaggtcatcaaggtcaacagcaaggttttcagaat
aatgtacaaaacaaaagaccagcattgttgataccacagtctagaggtggtaacaggaac
ccagtaatggagctgatgagcttctgccagtctttacaaatgggtttacctatgtatgat
tatttaccaaagagtggggtattctactgtgtagtatcactatttaacggagccagattt
cagggatcattgtgtaagacgaaggaggaggcagcagaatctgcggccagtgttgcctta
ctacagctgaagggcagcatgcagcagatggcagctcacccgatgatgcagatgccaggt
tttgtacccggagctctgccacaagggagacaattctcatctccaaattctgccttcagt
cctgttaacacttttacagctccaggaatttatcagggaaacagaggtcaaagccctaga
ggttaccatggttacgggcagcagcagcaacagagacctttcagtgggggtcaaggtcaa
actcattacaacaggggaggttactctagacaacaaaataattcggccaatcagcagcaa
ggaagaaatcagacataccaaaatcctcaagagatgacaaccagtcagcagcaaggaaga
aatcagacataccaaaatcctcaagaagtaatagccaatcagaatcaagaaagcaaaacc
gatgaaagatcactgttcaacagtcaaaaacaaagtaaagatgtgaaaactcaacccact
tgtgtggttacaccttttgttccaatgcaggtgactcggaaacatacaccacagaaagcg
aggaaaacttccgtctctgatgacaacacttctcgcatcgaggaagaaacattagaaaaa
aggggagagaacgtacctgtacgtgaagtaaagggagataactctatgcaatctaacaaa
ccgaaaactgattctagtgaaaccatttctagtaaaccagatccaaataattctaggaca
gaacgaaaagagtccggtagtactgatagtacaagtccaaagacaaaacagtcgacgcct
ccaaaatcagcgaaaaaaacggaaacagggtcggcgaaaaaatctcgaagacggttagcg
gctaattttaatgtgaaaccgtaa
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integrated database retrieval system
