Ruditapes philippinarum (Manila clam): 132721555
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Entry
132721555 CDS
T09557
Name
(RefSeq) DNA repair protein RAD50-like isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03440
Homologous recombination
rphi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
132721555
03450 Non-homologous end-joining
132721555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rphi03032
]
132721555
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132721555
DNA replication proteins [BR:
rphi03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
132721555
DNA repair and recombination proteins [BR:
rphi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
132721555
BRCA1-C complex
132721555
NHEJ (non-homologous end-joining)
MRX complex
132721555
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
AAA_15
SbcC_Walker_B
SMC_N
Rad50_zn_hook
AAA_21
ABC_tran
AAA_29
AAA_13
NPV_P10
NTP_transf_6
AAA_16
Motif
Other DBs
NCBI-GeneID:
132721555
NCBI-ProteinID:
XP_060561862
LinkDB
All DBs
Position
Unknown
AA seq
1312 aa
AA seq
DB search
MSTIEKMNILGIRSFGPEEQDKQTIHFFKPLTLILGPNGTGKTTIIECLKYMTTGVMPPG
ATKGGAFIHDPKIAHEREVRGQVRLQFRDISQKPVIVQRSLTATQKAKKVEMKTLDGVIT
RLNAAGEKQSINSKCADLDREMITSLGVSKPVLENVIFCHQEEANWPLSEGKQLKEKFDA
IFASTRYVKALDSIKKTKKEQDDKLKMYRNDVQYLKQHKEKAHQLECDLAEQEAKLEASK
ESVNKVNSQLKPIEEKMNKIDEQSAEIFGIQNKITQYGSEKKQIEKHAEELQDQIENEFQ
GTDEELKSMLSDFEDKLKERKRTLEEFEDRQNKLSRQSEKLDREKSAILVEVGRLEQEAE
RQEENVSKRDTLIKQFADEYSFDGLTGAITDEKYKLFLKNMQRKLETMVEETRQTKTDFE
EREGEIQQKIDELRDNKTKLEQNDKIKREMMLDNREKIKEINRKLSAIEASGGRLDQIKR
ELKRHEHDLQTQESSVNTDELKQEIAELSKEKSKMEAKISELNSEMNRLHLQSSAQAELD
MLKKDKASKEENIRRLKAKREDTVKYLLNHAPGKNIRGELEDYISNQNEDVKKCSAKMNQ
IKNTMSKMETERKMGMEQLKKKEAELKGLEERVYNVCGSQNFDEGLSTIQEKMEKVRDQR
GSLLGAQHFFKKYAKDLEKDDPCCPLCHRGFDTQQDVRELVLELKEKLRMVPSKLKTADE
EIDECQEKYDALMQLKPLRENMEKLEESEIPQLKSSLKKTQDEIHKQKEDLTNIEEELKI
KEDDEAMAKQIQPDIVMMDRYFGDVSELDKKIAMQAAKLSGGDSGRTLQMVIDEKEDLQV
KVDSSTRSLDHKRQKLADHSEQVQILRATINSLKEEKFGIESDLQQRIKLEEDKGNLESE
NTMHEQDIKDTAEKLRPIQSKMDRLRTEKEDLVKKKEEKLETAKAEVEIVKGHASQVKNI
NQDIKSYNQSGKASKLEENQADKERIEKKMAAIEEELKDIVTNIDKLRKDLSTQKVRELD
LQNNLNLRNKQKEIEKISRKIVDLESKLGDLDVAYLDRERRRLQREMENLTKQRHTAEGR
QTELENQIRAVKKELQTDMYKGAEEKYRNKMIDLRTTELANGDLEKYYHALDKAIMNYHN
MKMSEINKIIRDLWRQTYRGQDIETIEIRSDEDDSAAMKTRKTYNYRVVMIKPGDAVIDM
RGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAGALVEIIKGRI
HQRNFQLVIITHDEDFVELLGRSEYVDYFFKVSKNQYGCSRLTRAEVAELSR
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaccattgagaagatgaacatcctagggattcggagcttcggtcctgaggaacaa
gataaacaaactatccatttcttcaagcctcttacattgatattggggcccaatgggaca
ggaaaaactactattattgagtgtttgaagtatatgactacaggagtcatgcctccaggg
gccacaaaaggaggagcatttatacatgatcccaagattgcacatgagagagaggtcaga
ggtcaagtgaggttgcagttccgtgatatatcacaaaaacctgtcattgtacagaggtca
ttaacagctacacaaaaggcaaagaaggtagaaatgaagacattggatggtgtgataaca
aggttgaatgctgctggtgaaaaacagagtatcaactctaaatgtgctgatcttgacaga
gagatgattacctcccttggagtgtcaaagccagttctggagaatgtgatattttgtcac
caggaggaggctaactggccattaagtgaaggcaagcagttgaaagaaaagtttgatgcc
atatttgcttcaacaagatatgtgaaagctttagacagtattaagaaaactaagaaagaa
caggatgataagttaaagatgtacagaaatgatgttcagtatttgaaacaacataaagag
aaagctcatcagcttgagtgtgatttagcagaacaagaagctaaactagaggcttccaaa
gaatctgtgaacaaagtaaacagtcagctgaaacctattgaggaaaagatgaacaaaata
gatgaacagtcagctgaaatatttggaatccagaacaagatcacccagtatggcagtgag
aaaaaacagattgagaaacatgcggaggaactacaggaccagatagaaaatgaattccaa
ggaactgatgaggagttgaagagtatgctgtcagattttgaagataaattgaaggaaaga
aagagaacattagaggagtttgaagacaggcagaataagttaagtagacaatcagaaaag
ttagacagagagaagtcagctatactggtagaagttggcagactggaacaagaggctgag
agacaagaagaaaatgtttcaaaaagagatactctgatcaagcagtttgcagatgaatac
agttttgatggtttgacaggggccataactgatgagaaatacaaattgttcttaaagaac
atgcaacgtaaacttgagactatggtagaagaaactagacagacaaagacagattttgag
gagagagagggagagatacaacagaagattgatgaactaagggacaacaagactaaactt
gaacaaaatgataaaatcaagagggaaatgatgctggataacagagagaagataaaagaa
atcaacaggaagttgagtgccatagaagcttctggaggtagactagatcagattaagaga
gaacttaagagacatgaacatgatcttcagactcaggaatcttctgtcaacactgatgaa
ctgaagcaggaaatagcagaattgtcgaaggaaaagtctaaaatggaggctaaaattagt
gaacttaattccgagatgaataggcttcatttacagtctagtgcccaggctgaacttgac
atgctgaagaaagataaagcttccaaagaggaaaatattagaagattgaaagcaaagcgt
gaggacactgtgaagtatctgttaaatcatgcacctggcaaaaatatccgaggtgaactc
gaagattatatcagcaatcaaaatgaggatgtaaagaaatgttcggctaaaatgaaccag
ataaaaaatacaatgtcaaaaatggaaactgagagaaaaatgggcatggaacaactgaaa
aagaaggaggcagaacttaaaggacttgaagaaagggtatacaatgtgtgtggaagtcag
aatttcgatgaaggactctcaaccattcaggaaaaaatggagaaggtcagagatcaacgt
gggtcattacttggtgctcaacatttcttcaagaaatatgcgaaagatttagagaaagat
gatccatgttgtccattatgtcacagaggctttgatacacaacaagatgtccgtgaactt
gtgctagagttaaaggagaaattaaggatggtacccagcaagttaaagacagctgatgaa
gagattgatgaatgccaggagaaatatgatgccctgatgcagcttaaacctctccgagaa
aatatggagaaactagaagagtctgaaataccacagctaaagtcaagtttaaagaagaca
caagatgagatacataaacagaaagaggaccttaccaatatagaggaagaattaaagata
aaagaggatgatgaagctatggctaaacaaatacaaccagatatcgttatgatggacaga
tactttggtgatgtatcggaactagacaagaaaattgcaatgcaagcagcaaaactctca
gggggagactctgggaggactcttcagatggttattgatgagaaggaggatttgcaggtc
aaagtagattcatcaacaaggagtttggatcataagcgtcagaagttggcggaccactcg
gaacaggtacaaatattgagagctaccataaacagtctgaaggaagaaaagtttggtatt
gaaagtgacttacaacagagaatcaaactggaagaagacaaaggaaatctagagtcagag
aatactatgcatgaacaggatataaaggatacagcagaaaagttgagacccatacaaagt
aagatggacagattaagaacggaaaaagaagatttggtaaaaaagaaagaggaaaagtta
gaaactgcaaaagcagaggttgagatagtgaaaggccatgctagtcaagtgaagaatatt
aatcaggatattaaaagttataaccagtctggaaaagcgagcaaattggaagagaaccag
gctgacaaggagagaatagagaaaaaaatggccgccatcgaagaggagctgaaggatatt
gttaccaatattgataaattgagaaaagatctttcaacacaaaaggtacgagaacttgac
cttcagaataatctgaatttgagaaataaacagaaagagatagaaaagatcagtagaaag
attgttgacctggagagtaaacttggagatttagacgtggcttacctagacagggaacgt
agacgtctacaacgagaaatggaaaatctaacaaaacagcggcataccgcagaaggccgt
cagactgaattggagaaccagattagagctgtgaagaaggagttacaaacagacatgtat
aaaggagcagaggagaaatatcgtaacaaaatgattgaccttagaacaacagaactggct
aatggagatttagagaaatattaccatgcactagataaggctattatgaattaccacaat
atgaagatgtcggaaatcaacaaaattatccgagacctgtggaggcagacctacaggggt
caagacatagaaactatagagatacgttcagatgaggatgattccgcggccatgaagaca
cgtaagacgtataactaccgtgttgtgatgatcaaacctggggacgctgttatagacatg
agggggagatgtagtgctggacaaaaggtactggcatccttgataatacgcttggccttg
gctgagacgttctgtttgaactgtggaattttagcgctagatgaacctacgaccaatctg
gatagagaaaatattgaaagtttagctggtgcactagtggagatcattaaaggacgcatt
caccaaagaaactttcagctggtaatcattacccacgatgaagattttgtagagttactg
ggtagatcagaatatgtagactatttcttcaaagtcagcaaaaatcaatatggttgttca
aggctgacaagagctgaggttgctgaactgagcagataa
DBGET
integrated database retrieval system
