KEGG   Ruditapes philippinarum (Manila clam): 132721702
Entry
132721702         CDS       T09557                                 
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 1-like
  KO
K11984  U4/U6.U5 tri-snRNP-associated protein 1
Organism
rphi  Ruditapes philippinarum (Manila clam)
Pathway
rphi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rphi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    132721702
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rphi03041]
    132721702
   04121 Ubiquitin system [BR:rphi04121]
    132721702
Spliceosome [BR:rphi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP specific factors
    132721702
 Complex C
   U4/U6.U5 tri-SnRNP specific factors
    132721702
Ubiquitin system [BR:rphi04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    132721702
SSDB
Motif
Pfam: SART-1 HIND
Other DBs
NCBI-GeneID: 132721702
NCBI-ProteinID: XP_060562043
LinkDB
Position
Unknown
AA seq 772 aa
MGSSKKHKEKDREHKKKRKHRSRSRERSRSKEREVKRRHRGRDDDRYYEQHPEGFDREEG
EIEDNNPALKPEPTGASSGGGGGDISLSIEETNKLRAKLGLKPLEVSTGAPDSEKESLRD
AVHKPAESWTQAKKTEKIKDKLERSKQRREISSKLDKIKTLGESDSDEDAATWVRKNRMK
QREKDRAEKTARMLEEMDEEFGIGNLVEEEFKQDKTKRYSSKDLKGLKVQHDVGSFKEGQ
TVILTLQDRGVLDEGDEAETLVNVNMIDNEKANKFVELMKKKPDYNPYDDAEEDEYGLFK
PKDVLAKYDDEIRGEKKKDFQLGARGTYNSEQDKQMERITAELRAQSQTLSSQLTLASEY
MTAEEAQAKFRKVKKKVRKIRKKKMLKADDLLPLPDETSMNYGSRLSGRQEESAVIPGLE
TSEPVPGMEYQEDIKPFIPPKPTLEDVSDDIESDEDDVEVEDLTGVRIDEDEANMELQSA
LDKARKLKQKKDKLNPDKIAERIKADEDTDMEVKEKGISITLNATSEFCRALGDIPTYGQ
SGNRNEIEKDELMELEKELIEERRRMEEEEEDEQSGWNRVEIDETPVNIEGEEGAILEDE
PVLNKGIGQALNVAVNKGFLQKEKLKSQKMSKNMLEMTAQNYSIEDKRYDDLDEKYKKRD
RYTGMLMDFKEKDSYKPEVKLEYVDESGRHLNQKEAFRQLSHRFHGKGSGKKKTEKRGKK
LDEEHLMMKMSATDTPLNTVALLKEKQQQEKTPYILLTGNKGFTQTMVKPST
NT seq 2319 nt   +upstreamnt  +downstreamnt
atgggttcttcgaaaaaacacaaggagaaagatcgagaacacaaaaagaaacgaaaacac
cgttcccggtccagagaaaggtctcgttccaaagaacgcgaagttaaaaggcgacataga
gggagagacgatgacagatattatgaacaacatccagaaggattcgacagggaagaagga
gaaattgaagataataatccagctttgaaacctgaacctactggggcatcttcaggtggt
ggtggtggtgacatcagtttgtcaattgaggagacaaataaattgagggcaaaacttggt
ttaaaacctttggaagtgtcaacaggagcaccagattcagagaaagaatctttgagagat
gcagtacacaagccagcagagagctggacacaggctaaaaagacagaaaaaattaaagac
aaattagagaggtctaaacaacggagagaaataagcagcaaattagataagataaagaca
ttaggagagagtgactcagatgaggatgctgcaacatgggtgaggaaaaacagaatgaaa
cagagggaaaaggacagagcagaaaaaactgctcgtatgttagaggagatggatgaagaa
tttgggataggaaatcttgtagaagaagaattcaaacaggataaaacaaagcgctattca
tccaaagatttgaaaggattaaaagttcaacatgatgtaggcagttttaaagaaggacag
actgtgatacttacattacaagatagaggtgtgttggatgagggtgatgaagctgagaca
ttggtgaatgttaatatgatagataatgagaaagccaacaagtttgtagaattgatgaag
aagaaacctgattataatccttatgatgatgctgaagaagatgaatatggattgtttaaa
cccaaagatgttttagcaaagtatgatgatgagataagaggagagaagaagaaagatttc
cagcttggtgctaggggtacatataattctgaacaagacaaacagatggagagaattacg
gctgaactcagggcacaatctcaaactttgtcatctcaattgacattggcatcagaatat
atgacagcagaagaggcgcaagctaagtttaggaaagtgaagaaaaaagtcaggaaaata
agaaagaagaaaatgttgaaggcagatgatcttcttccattgccagatgaaacttccatg
aactatggttcaagattgagtgggaggcaagaggaaagtgctgttatccctggtctagag
acatccgagccagtgcccggcatggagtaccaggaagatatcaaaccatttatcccacct
aaacctacattagaggatgtcagtgatgatatagaatctgatgaagatgatgttgaagta
gaggatttgacaggggtaaggatagatgaagatgaggcgaatatggagttacaatcagca
cttgataaagccaggaaacttaaacagaagaaagataaattaaatcctgacaaaatagct
gaaagaataaaagctgatgaagatacagacatggaagtaaaagaaaagggaatatcaata
acattaaatgctacctcagagttttgtcgtgctcttggtgatatacctacatatggacag
tcaggcaacagaaatgaaatagaaaaagatgaacttatggagttagaaaaagaattgata
gaggagaggagaagaatggaggaggaagaggaagatgaacaatctgggtggaacagagtg
gagattgatgaaacacctgttaatatcgagggtgaggaaggggctattttagaagatgaa
ccagttttaaacaaaggtattggacaggcacttaatgtagctgttaacaaaggttttcta
cagaaggagaagttgaagtcacagaaaatgagcaaaaatatgttagaaatgacagcacag
aattattcaatagaagataaaagatatgatgacttggatgagaaatataagaagcgtgac
agatatactggcatgttgatggactttaaagagaaggacagttataaaccggaggtaaag
ctagagtatgttgatgaatcaggcagacatttgaatcagaaggaagcattcagacaatta
tctcatagatttcatggtaaaggatctggcaaaaagaaaactgaaaaacgtggcaagaaa
cttgacgaggagcatttaatgatgaagatgagtgcaacagacacgccattgaatactgta
gcattgttgaaggagaaacaacaacaagagaaaacaccatacatcctacttactggaaac
aaaggattcacacagacaatggtgaaaccatcaacttga

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