Ruditapes philippinarum (Manila clam): 132722403
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Entry
132722403 CDS
T09557
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 12-like protein
KO
K15162
mediator of RNA polymerase II transcription subunit 12
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphi03021
]
132722403
Transcription machinery [BR:
rphi03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
132722403
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med12-LCEWAV
Med12
KDM5_C-hel
Motif
Other DBs
NCBI-GeneID:
132722403
NCBI-ProteinID:
XP_060562886
LinkDB
All DBs
Position
Unknown
AA seq
2118 aa
AA seq
DB search
MAAFPSQDKRPLKKARLGPPDVYPQDPKQKEDELTSTSVKLGFSNLPHFNDEYGSGKNAN
ISQEKFGAFFSAVMTKKIELNTWSDSSKKKPQIMKDNFWPVTTTKKPLVENWFKDLASGS
KPLAHLSKRVPSFFYSKKEEIFTNLCEFNIPMIKAVWFIKMTAAHYLAMQENKPKKRQTV
DQSLEWTIGLTKFMKEQLNKVQEHYHGSTTGPVMSFLTATQAPSQVDLDLALKQWHYCSR
LARHMYDEGLLDRHEFLSWIVEIVEKTKQTDDTILKLVLKELLQYLDEVTLSAQLSRRLA
YGAARRISQMCNDSGCTSPRTQSPMLNASNNNNNNNQLVSQNPLAAVFAEYNNCPQHRGI
ILSLSACLQVITMTSPSAMIWNNLSEGRSSSPYCGSPLDILPCSPSCLPMPPSEQNNQIR
SQIRNMEQQIRLRSRAAEVRWSSDKCQQSTTGYTMGKVLNVLDMLDRHNFDKVESNNCLD
SLYNKIFTVTQNKDGNEPLVSDEPIMTLLIDWAVSTKRQGAHRAVVVAKLLEKRQSDIRA
EKYGDSDVPDDKDSAGSDMMIPASVPVFQSLLLNFLDTKAPVLDDTANSSEDSQQAFANL
IHLFSELIRHEVFSHDAYMCTLISRGDLMSAPAVASMVADSVDLLSMKSEVESIKHEHQD
DIKVDMDIHTMDTDFGSFFDVKDEPRLSPTAPASVKSIKSEKEQPIASVSKPEPPMMAEL
KGPSRHQQYATHFPLPQDELSSHECNQRLVVLFGVGKARDAARHILKKVGKEILRLYSRK
SCIDMSSGDLGKPKKKKDKDEPSSVSVVGNLEVLFGKFHKLSYYDQHVVTWQCTMAVHEQ
INCFTSGTSTYLPQVENISYLFDLMEHSMAVNTLLEFSVQLLKDLSIVESQLSASNSNLS
GIYTTSLCLCIVAIFRKYHSFLLVSEDLTFQAFEGLIGVVKHVCNPADCSSAERCILAYL
YDVYTSCSYLKNKFQEMFSNAYSKIRVTLYADIKPSASNLMWDPAFMGSFLENAKTIPIE
QALIDQLNKQGASRYSFVVNTMLNICKFLLSSDRLNEISVLCAELTAKCNSLSAEWLGVL
KALCCSSNHNCGYIDVLTQIDVSDLSFHDNLAVFTSILIARHCFSLQDFIGYVALPSLVN
PAFAGGDQDAEPGARLTCHLLLRLFKVSHASNNPYPGGNKRGTYVKASSDRHLLAAVHNN
IDVGAVLAVLKAMLALADSCRDEVKTKTSSKKDSKGGDDIISTILSSLDVDISMDMMLGT
SGSMENAGLSEFSKHSLREMCSQDWVREKFLRDPEGLFNSEMLLDTMLSSEQTQQLVRMI
CYPSSAASKMDDDEIDNKETISRILETLDPWTLRVSLLELNLMFKQAKNNAETNNILDNI
SQGTIYLFHQQTEHHSRTTNNSQAAALLETMPVQSPKNDSTEKDNSVWLVAPLISKLPSG
VQGRVLRQAGQVLENSNTFLAPKSKLDKERKNKSLLSHQPFLSLILTCLKGQDEQREGLL
NSLLNQLEKFITSFREMLEKYPDEAKIRNNIHETLQLRLSLVGGMFDTIQRNTGLTTDWA
LLLLQLISSGVVDLHSNYELFATVLDMLNCLMLGTLVPDPSEKSDDNRKTHSNLVKKLRK
DLGDKIFEATDQVRQLLPLPKRYYEVVTVEPHGTLVDTKGNKITGFDSIKRKQGLQVGKI
EMVSPWDVIESTKNPPPLSWTFFGAVKIEKKPLKYEEQHRLLLYHSHCLQKPANYYLDPP
ALPPEELEPPPEKVQQEEKQSREPVKTATSVDSNRPNRTRKRRGSRVTNSSSSYTPPSMP
QRYNPGYSDPIYPQQAPASNWYGGPPQTQQQPAYMPQQAMQPAPGPRFGASFPSSKQAIQ
TMLRSRQPGTSGYMPQQSMHTNMQLLQKQRQQQMVRHRLQQQYSQNRMADNPGHYGNSVP
GAAPSSAMMSMSQGPINQSTYQSNYGTMPSQPPMEPMSTGMMSQNFNQSYQSTQNPSMMS
SLPQQTNYITPQSQPTQVPYSGTSRIPMQSGGMNPPSTMSGMGTYNQMGQSPTVGPAGGA
GAYMQRMPTPQQQQQQQQRMQQYRQQQMLQMQQQKQQMQQSNQQQQTAAILAQLQRQVPA
QQQPQMTPSFNQYPPQNF
NT seq
6357 nt
NT seq
+upstream
nt +downstream
nt
atggccgcttttccaagtcaggataagcggcctttaaaaaaggctagattgggaccgcca
gatgtttatccccaggacccaaagcaaaaagaggatgaactcacatcaaccagtgtcaag
cttggattcagtaatttgccacacttcaatgatgaatatggatccgggaagaatgcgaac
atcagtcaagagaagtttggagcgttcttcagtgcggtgatgaccaagaagatagaattg
aacacatggagtgacagtagcaaaaagaagccccagattatgaaagataacttctggccg
gtaacaacaacaaagaaacctctcgtagagaactggtttaaagatttggcctcgggatcg
aagcctctagctcacctgagcaaacgagtgccgtccttcttctacagtaagaaagaggaa
atattcaccaacctttgcgagtttaacattccgatgataaaagccgtgtggttcatcaag
atgacggcggcccactacctcgccatgcaggaaaataaaccaaagaaaagacaaacagtt
gatcagtcactagaatggacaataggtctcacaaagtttatgaaggaacaattaaacaag
gttcaggaacattatcatggcagcactaccggtccggtgatgagttttcttaccgccact
caggcgccgtctcaggtcgacttggatcttgcgctcaaacagtggcattactgttcacgg
ctggcaagacatatgtatgatgagggactactggacagacatgagtttttgtcatggatt
gttgagatagtggagaagacaaaacagactgatgatactatactgaaactggtgctgaaa
gaattgttacagtatcttgatgaggtgacattatcagcacagttatcgagacgtctagct
tacggtgccgcacgtaggatcagtcagatgtgtaatgactcaggttgtacctcgcccagg
acacagtcgccaatgttaaacgcaagtaacaataataacaataacaatcagctggtatcc
cagaatcctctggctgcagtgtttgcggagtacaacaattgtccacaacacagagggatt
atactcagtttaagtgcatgtctccaggttataacaatgacaagcccgtctgctatgatc
tggaacaacttgagtgaaggtaggagtagttccccttactgtggatcaccactggatatt
ctcccttgttcaccgtcatgtttacctatgccaccaagtgaacaaaataatcagatacgt
tcccagattagaaatatggagcagcagatcagattacgtagtagagcagcagaagttaga
tggtcctccgataaatgtcaacagtctacgactggttatactatgggtaaagttttgaat
gttctggacatgttagacaggcacaactttgataaagtagagagtaacaattgtctagac
tcactgtataacaaaatcttcactgtcacacagaacaaagatggaaatgagccattggtc
agtgatgagccaatcatgacgctgcttatagactgggctgtgagtaccaagagacaaggt
gctcatagagctgttgtggttgctaagttactagagaaacgacaaagtgacattagggca
gagaaatatggggattcagatgtacctgatgataaagattctgctggtagtgatatgatg
ataccagccagtgttcctgtcttccaatccctacttcttaacttcctagatactaaagct
cctgttctggacgataccgctaactcgagtgaggacagccagcaagcgtttgctaacttg
atccacctgttctcagagttgatacgtcatgaagtgttctcacacgatgcgtacatgtgc
acgttgatctcgcgtggagatctcatgtccgcgccagctgtagcttccatggtggccgac
agtgtcgacttactcagtatgaagagtgaagtggagagtattaaacatgaacatcaagat
gatattaaggtggacatggacatacatacaatggatacagactttggtagcttctttgac
gtgaaagatgaaccaagactgagtcccactgcacctgcttccgttaaatcaataaagtca
gagaaagagcagcctatagcaagtgtaagtaagcccgagccgccgatgatggcggagctc
aaaggtccatccagacatcagcagtacgctacccacttccctctacctcaagacgagttg
tcaagtcacgaatgtaatcaaaggctagtggttctgttcggtgtcggaaaagctcgggac
gctgcgcgccacatcttaaaaaaggtcgggaaagagatcctacgattgtacagtcgtaaa
agctgtatagacatgagtagcggtgatctcggtaaaccgaagaaaaagaaagacaaagac
gaaccgagttcggtatcggttgtcggtaacttagaagtgctgtttggaaagtttcataag
ttatcgtattacgatcaacatgtggtcacgtggcagtgtacaatggccgttcacgaacag
atcaattgttttacgtcgggaacgtcaacgtatttaccgcaggtggaaaatatatcttac
ttgtttgatctgatggaacattcaatggctgttaacactctcctagaattttccgtacag
cttctgaaagatttgagtatagtggagagccagctgtctgccagtaactctaacttatct
ggtatatacacaacatcactgtgtctgtgtattgttgctatcttcaggaaatatcattcc
ttcctgctagtctccgaagatctcacatttcaggcatttgaaggtctgataggtgtggtg
aagcatgtatgtaacccagccgactgttcatcagcagagagatgtatcctggcatacctg
tatgatgtctacacttcctgtagctatctcaagaacaagttccaagagatgtttagtaat
gcatactctaagatacgagtaacattatatgctgatatcaagccatctgcctctaacctc
atgtgggatccagcattcatggggagcttcctggaaaatgccaagacaatacctatagaa
caggcattgatagatcagctgaataaacaaggagctagtagatacagttttgttgtcaac
acaatgctgaatatctgtaaatttctactctcatctgacaggttgaatgagattagtgtg
ttatgtgcagaactgacagctaaatgtaattctctgagtgctgaatggctgggtgttctt
aaagcattatgctgctcgtccaatcataattgtggttacattgatgtcctgacacagata
gatgttagcgacttatcgttccatgacaatctggccgtgttcacttccatattgattgct
agacattgtttctctctacaagattttataggatatgtggctttaccatctctagtcaat
cctgcatttgctggaggggaccaggatgctgagccgggcgccagactaacgtgtcactta
ttactacgtctctttaaagtgtctcacgccagcaacaatccttacccaggtggtaataag
agagggacatatgttaaagcatcgtcggaccgacatttgctagcggctgttcataataac
atagatgtgggggccgtcctggcagtcttaaaagccatgttagctttagctgactcgtgt
agggatgaggtgaaaacaaagacgtcgagtaagaaggacagtaaaggaggagatgatatc
ataagtacgatattgagtagtttagatgttgatatcagcatggatatgatgcttggtaca
tcggggagcatggagaatgccggactaagtgaattctcgaaacattctttacgagagatg
tgtagtcaggactgggtgcgagagaaattcttacgagatcccgagggtctgtttaactca
gagatgttgctagatacaatgcttagttcggaacagactcagcagttggtaagaatgata
tgttacccgtctagtgccgccagcaagatggacgatgacgaaatagacaacaaggagact
attagtagaatattagaaactctcgacccttggacactcagagtatctcttctcgaactg
aatctcatgtttaaacaagccaaaaacaatgcagagacgaacaatatactggacaatata
tcacaaggaacaatttatttgtttcatcaacaaacagaacatcacagtcgcacaaccaat
aactcccaggcggctgccttgttagagaccatgcctgtacagtcaccaaagaatgattcg
acggagaaagataacagcgtatggctggtggcgccactcatctctaaattacccagtggc
gttcaggggagagtactccgacaagctggtcaggtgctagagaacagcaacacgttcctc
gcaccgaaaagtaaacttgacaaggagagaaaaaataaatctttgttgagtcatcagcca
ttcctgtctttgatattaacatgtttaaagggccaggatgaacagcgggaaggtctgctc
aattctttactcaaccaactcgagaaattcatcaccagtttcagagagatgctggaaaag
tacccggacgaagctaaaattagaaacaatattcacgagacgttacaactacggttatct
ctggtaggcgggatgttcgataccatacagcgtaacacgggtctgactacagactgggcg
ttacttttgttacagttaataagtagtggagtggtagaccttcattctaactatgaatta
tttgcgactgtgttagacatgttgaattgtttaatgctgggaacattggtacctgaccca
agtgagaaatctgatgacaacaggaaaactcatagtaaccttgtgaaaaagttaaggaaa
gatctaggagataagatatttgaggctacagaccaggttagacagttacttcccttgcct
aaacgttattatgaagttgtcactgtggagcctcatggaactttggtggatactaaaggc
aacaagattaccggctttgattccattaaacgtaaacagggtttacaggtgggtaaaata
gagatggtgagtccatgggatgtgattgagagcacaaagaatccacctccattgtcgtgg
acattttttggagcggtgaaaattgagaagaaacctttgaaatatgaggaacagcacaga
ttattgttgtatcattcccactgtctacagaaacccgccaactattaccttgacccacca
gctctaccccctgaggagttagaacctcccccagagaaagttcaacaggaagagaaacag
agcagggaaccagtgaagacggcaacatctgttgattctaatcgaccaaaccgaacaaga
aagagacgagggtctcgagtcacaaactcttcatcatcatacacacctccctcgatgcct
caacggtacaatcctggttactcagatccaatttacccccaacaagccccagcctctaac
tggtatggaggacccccacaaacccagcaacagcctgcttatatgccccaacaagcaatg
cagccagctccgggaccaagatttggagcttcattcccttcatcaaaacaggcaattcaa
acgatgctgcgatcacgacagccgggcaccagcggttatatgccgcagcagtcgatgcat
acaaatatgcagcttctccaaaaacagcgacagcagcagatggttcggcaccgtttacag
caacagtactcgcaaaatagaatggcagacaaccccggtcactatggtaacagtgttccc
ggtgctgctccaagctcggcaatgatgtccatgtctcaaggtcctatcaaccaatcaaca
taccagtctaactatggcaccatgccgtctcaaccaccaatggaacccatgtctaccggt
atgatgtcacagaatttcaaccaatcgtatcagagtacccagaatccctcgatgatgtca
tcattacctcagcagactaattatatcacaccacaaagccagcctactcaagtgccatac
tctggcacatcaagaatccccatgcagtcaggtggaatgaacccaccgtccacaatgagc
ggtatgggtacctacaaccagatgggccagtccccgaccgtcggtcccgcgggtggggca
ggcgcctacatgcagcgtatgccaacaccacagcagcaacagcagcaacaacaacgcatg
cagcaatacagacaacaacagatgttacagatgcagcagcaaaaacaacagatgcagcaa
tccaatcagcaacaacagactgcagctatactagcccaactacaaagacaagtacccgcc
cagcaacagccacaaatgacccctagttttaaccagtatccaccacagaacttttga
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integrated database retrieval system
