Ruditapes philippinarum (Manila clam): 132722736
Help
Entry
132722736 CDS
T09557
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132722736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphi03021
]
132722736
03041 Spliceosome [BR:
rphi03041
]
132722736
03036 Chromosome and associated proteins [BR:
rphi03036
]
132722736
Transcription machinery [BR:
rphi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
132722736
Spliceosome [BR:
rphi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
132722736
Complex B
132722736
Complex C
U2 SnRNP specific factors
132722736
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
132722736
TFTC complex
132722736
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
132722736
NCBI-ProteinID:
XP_060563261
LinkDB
All DBs
Position
Unknown
AA seq
1140 aa
AA seq
DB search
MHLYNLTLQRATGVTCAVHGNFSGSKLQEVIVARGKILELLRHDPNTGKIYPVLTQESFG
IIRSLMPFRLTGGTKDYLVVGSDSGRIVILEFLAQKNMFEKVHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAVEKQKLVYILNRDAQARLTISSPLEAHKANTLVFNMVGVDVGFENP
TFACLEIDYEECDADPTGESADKAQQLLTYYELDLGLNHVVRKYSEPLEEHANFLISVPG
GTDGPSGVLICSENYITYKNLGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIHLKYFDTIPVAASLCVLKSGFLFSASEFGNHNLYQ
IARLGDDDDEPRFSSASPLEEGTTFFFSPRPLKNLVMVDEMDSLSPITSCQIADLANEDT
PQLYTLCGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVKKHSDDDYDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSQLGEDALVQIYPDGIRHIRSDKRVNEWKTPG
KKNIVKCAVNQRQVVIALSGGELVYFEMDPTGQLNEYTERKEMSSDVVCMALGRVPSGEQ
RCRFLAVGLADNTVRIVSLDPSDCLSPLSMQALPAAPESLCIVEMGGTEAKEETGEAGTA
GGLFLNTGLQNGVLLRTVLDTVTGDLSDTRTRYLGSRPVKLFRIAMQGSEAVLAMSSRSW
LSYAYQSRFHLTPLSYESLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVSHS
LQYTPRKFVIHPESGHLIIIETDHSAYTEATKAQRKQTLADAMIEDAQEDERELAAEMAA
SFLNEELPESVFGAPKASAGMWASIIRVINPITGATLDSINLEQNEAAHCLSIVKFSNSP
DDTHVIVGVAKDLTLNPRTLGNGFLYTYKLIEGERLEFVHKTVVDEMPGAIAPFQGRALI
GIGKFLRIYDLGKKKMLRKCENKQMCKMSLFNLRNSILNEITGHIFFFKFQADILINFYI
GEVVTSLQKATLIPGGSESLVYTTLSGGIGMLVPFTSHEDQDFFQHLEMYMRQEHPPLCG
REHLSYRSYFFPVKNVVDGDLCELFPSMDVAKQKSVAEELDRTPAEVSKKLEDIRTRYAF
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgtacaaccttacactacagagagccacgggcgtcacttgtgctgtccatggc
aatttttctggttccaagttgcaggaagtgattgttgctaggggaaagattctggagcta
ctcagacatgatccaaacactgggaagatttatcctgtattgacacaagaatcatttgga
attatacgttctttgatgccattcagattaacaggaggaaccaaagattatcttgttgtt
ggctcagactctggtagaattgtaatcctggagtttctggcacagaagaacatgtttgag
aaagtacatcaggaaacatttggcaagagtggctgtagacgtattgttcctggccaattc
ctagctgttgatcctaaaggcagagctgttatgataggtgctgttgagaagcagaagtta
gtgtatatattaaacagagatgctcaggccagactgacaatctcatcaccactagaagca
cataaagcaaacaccttggtgtttaacatggtcggcgtagatgttggttttgaaaatcct
acatttgcttgtcttgaaatcgattatgaggaatgcgatgctgatcctactggggaatct
gctgataaagcacagcaactattaacatattacgagttggatcttgggctgaatcatgtt
gtgagaaaatactcggaacctttagaagaacatgccaactttctcatctctgttcctggt
ggcacagatggacctagtggtgttctgatatgttccgagaactatattacatacaagaat
cttggtgaccaaccagatataagatgtcctattccaagaaggcggaatgatttagatgat
ccagaaagagggatgatatttgtatgcagtgccacacataaaacaaagtcgatgtttttc
ttcctggcacaaactgaacaaggggacattttcaaaatcaccttggaaacagatgaggat
atggttacagaaatacacctcaagtactttgatacaatccctgttgctgcaagtctgtgt
gtgttgaaatctggatttctgttttctgcctcggaatttggaaatcataatttataccag
atagctcgactaggagatgatgatgatgagcctcgctttagtagtgctagtccactagaa
gaaggtactactttcttcttctctcctcgaccactgaaaaacctggtcatggttgatgaa
atggacagtttgtcacctataacatcctgtcagatagctgatttagccaatgaagacact
ccacagttgtataccttatgtggtagaggtcctagatcttctctgagagttctcagacat
ggtctcgaggtgtctgaaatggctgtatcggaactacccggtaaccctaatgctgtatgg
actgtgaagaaacactctgatgatgactatgatgcatacattattgtgtctttcgttaat
gctaccttggtactgtctatcggagagacggttgaggaagtgacagactccgggtttctc
ggtacaacaccaaccctgtcttgttctcaacttggggaagatgctcttgtccagatttat
ccagatggtattcgtcatattagatctgacaagagagttaatgagtggaaaactcctggc
aagaagaatattgtcaagtgtgctgtaaatcagagacaggtggttatagccctgtcaggt
ggtgaacttgtctactttgaaatggaccctactggccaactaaatgaatacacagagagg
aaagagatgtcttcagatgttgtatgtatggcactgggccgggtaccgtcaggagagcag
agatgtcggttcctggcagttggattggctgacaacacagtcagaattgtctcccttgat
ccatcagattgtttgtcaccattgagtatgcaggctctaccagcagcaccagagtcactg
tgtattgtagaaatgggaggtacagaagccaaagaggagaccggtgaggctggtacagct
ggtggattgttccttaatactggattacagaatggagtattgttgcgtacagtgctggac
actgtaacaggagatttgtccgacacgagaaccaggtacctcggttcaagaccagtcaaa
cttttcagaattgccatgcaaggctcagaggctgtgttggccatgtcaagtagatcttgg
ttaagttatgcttaccaaagcagatttcatctaacaccattatcatatgagagtttagag
tatgcctcgggctttgcctcagaacagtgtccagagggtattgtagccatctctactaat
acattgagaattttggcgttagaaaagcttggagcagtatttaatcaagtatctcacagt
ttgcaatatacaccacgcaagtttgtcatacatccagagtcaggacatctcattatcata
gaaacagatcatagtgcttatactgaggcaacaaaagctcagagaaaacaaacattagct
gacgcaatgatagaggacgcacaagaggatgagagggagttagcagctgaaatggctgca
tcatttctgaacgaggaattacccgagtctgtgtttggagcaccaaaagccagcgctggc
atgtgggcgtcaattatccgagtcatcaatcctattactggagcaacattggattcaata
aatcttgaacagaatgaggcagctcattgtttatctatagtgaaattctccaactcacca
gatgacactcatgttatagttggtgttgctaaagatttgacattaaatcctcgtacatta
ggaaatggatttttatacacttataaactgatagaaggtgaaagacttgaatttgtgcat
aaaactgtggttgatgaaatgccgggagccattgcaccattccagggtagggccctgata
ggaataggaaaattcttgaggatttatgatcttggcaagaagaaaatgctgagaaaatgt
gaaaataagcaaatgtgcaagatgtccttattcaatctccgtaacagtatcctcaatgaa
ataactggacatatattttttttcaaatttcaggctgacatattgatcaatttctatatt
ggtgaggtggtaacatcattacagaaagccacactgatacctggtggatcggaatctcta
gtttatactacattatctggaggaattggcatgcttgtacccttcacatcacatgaggac
caagacttcttccaacacttggagatgtacatgagacaggagcatccccctctatgtggg
agagaacacctttcatacagatcatacttctttccagtaaagaatgttgtggatggtgac
ctgtgcgagttgtttccatcaatggatgtagccaaacagaagagtgtagcagaggaactt
gacagaacaccagctgaagtatccaaaaaattggaagacatcaggactagatacgccttt
taa
DBGET
integrated database retrieval system
