Ruditapes philippinarum (Manila clam): 132723292
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Entry
132723292 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132723292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132723292
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132723292
mRNA degradation factors
5'-3' decay
Decapping complex
132723292
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_Vps41
WD40_Prp19
ANAPC4_WD40
Sey1_3HB
Motif
Other DBs
NCBI-GeneID:
132723292
NCBI-ProteinID:
XP_060563949
LinkDB
All DBs
Position
Unknown
AA seq
1432 aa
AA seq
DB search
MDETKSPTSSMESTGDTSRLLKELLDLQKSTASSMMSIDRSVTIGDSNEILHSIPSMGQT
TGDGTDPTLTELIKTMYDEGAHHQLITLQGTDTANSFSVYGQEVDIISSKQVAKSQSLSG
STGSNKVKITPVVNYDWENRAYIGNLVAVHRGNVFVAYVLKGKTGGVVRITNRRTAERHL
LKDFVGRVIDLAFAHTDDILLAVVDEIGNLCVYELKQVTDDGKITSSMLLHIQRPETTLV
SEYHRVIWCPYIPDDADDSSATDSSTQDNASRVLVLTNDEKVXPFVVCFITYXSCSGPLY
TRDVETGLQXKIKSHVKPIMDAAFSPDGTALATASIDGEVKFFQVYMHEQTSPRCLHQWK
PHNGKPMSCLFFLDDHKNCSPELKNWKFLACTGLPNNQVSKFKIFTCDWNYWCPKRIRFL
CPRMGPSNFLVGPCMKASIDLVVAKFFVLSDKKEKVLYVLQIHQDSEQNTAHVSSVSEFT
LAQPCLSFAILDAGYKEIKKXSKGDDSHLDEITTGEIIKEDVDDEDKKVEQNTSSISVQI
KLYTVHPKALQELLIRFKPESSAPQPPPPSVSSVSQSEGGMVDGLSDISMNMEGSGEHNK
SDSFSGAVTEHALGQPVLLTPDAFTSSPRKQYPEDSMLDGVRGSMSSTSSFTQVSAMNDD
FLSPRSSSGSTITQTPTTPKNGAQSPATSKSETTPSSIPLPPISSSEEHELATPTSTARE
PEVREATPTPEETQEVDDFFQQQTTEKRDLQMVSLDSTQSTGAYEVSEGRIHGKSQSSYD
EMDEEVAEVMGEDQDGYSEGPTEGTQPFEEREDTGQVGESTESSLRMWPKPPDVGGSINE
VGDVDDTENVDEEEEEGEDDDDDDDDVVVEEEEENVVEGESEGEKEGDADEEIEEEIEEE
QEPSEESMDNKREPMAAPVAGSGYSSSPRDNRPVEVREIHRETIREVFDTAEIQKLHSSM
AAILQAIQNQQQQLEFLKHNMSAQQENYLELRRRQLEQEQLHQVSEGAQPSIEEHLGKLE
NIVTSRVERLFNQHSQKENQRVQDILRQAEARDERKQERLQNTVATSLAQAVNSHMDKVV
RSTIVPSITKVLEPVKDQIHQDMTQKLTAADSLIRENASHIAKTFRSRQTVEAVGVAAGN
AIQAPMQAAYREAFQNIVIPSFERTTQNMYQQVTDTFQRGTKEYTRQLESHLDSIRQKHV
EARDPVVAELRKLTDSFQTSAEQMKSHVIATIQSQLSNEVHKSLSRLQDDMSQYVREAVR
EEVAVAMREQGSSISDSVLNAMRSGAVTPMRATPDPQVEKTHILNLLRQGQLNAAFQQAL
SAANLELVMSLCETVNPSQVFNQQPCPLHQPVLLSLIQQLSADLENHTDLKYKYLEEAVM
NLDPHDSVTQEHMKGVLYALNQKLRIYIPAHPNDKVTRSLKMLLMASESLIK
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atggacgagacaaaatcaccaacttcttcgatggagtcgaccggggatacaagtcggctc
ttgaaagaattgctagatcttcagaaatcaacagcatcatctatgatgagtatcgataga
tcagtgactataggtgatagcaatgagatcttgcattcaatacctagtatgggacaaaca
actggagacggcactgaccctactcttacagaattaataaagaccatgtatgatgaggga
gcccatcatcaactaatcacactacaagggacagatacagccaacagtttcagtgtttat
ggtcaggaggtggatataatatctagcaaacaggtggcaaaatctcagtcattgtctggc
tcgaccggatctaacaaggtaaagataacacctgtagtgaattatgactgggagaacaga
gcttatataggaaatcttgtagctgttcacaggggaaatgtatttgtggcttatgtcttg
aaaggcaagactggaggtgtggtaagaataacaaacagaaggacagcagagcgtcatttg
ttaaaagattttgtggggcgtgtaatagatctagcgttcgctcacactgatgatattctg
cttgccgtggtagatgaaataggaaatctctgtgtttatgagcttaaacaagtgacagat
gatggcaaaataacttcctcgatgctgttacatatacaacgtccggagacaactctggtg
agtgagtatcatcgtgtaatatggtgtccgtatatacccgacgatgctgatgatagtagt
gccacagattccagcacccaggataatgccagccgtgtacttgttcttacaaatgatgaa
aaggtatgaccatttgttgtttgttttatcacttattgatcctgttctggacctctgtat
acccgagatgtagaaaccggattgcaatagaagatcaaaagtcatgtaaagcccatcatg
gacgcagcattctctcctgatggcactgctctagctacagccagtattgatggtgaagtg
aagttcttccaggtgtacatgcatgaacaaacttctcccagatgtttacaccagtggaaa
ccacacaatggaaagccaatgtcttgtttgttctttttagatgatcataaaaactgcagc
cctgaattaaaaaactggaagtttttagcgtgtactggtcttccaaacaatcaggtttca
aaatttaagatatttacatgtgactggaactattggtgtcccaaacgaatcaggtttctg
tgtcccaggatgggcccgtctaattttttagtggggccatgtatgaaagcttccatagac
ctggtagtggccaaattctttgttctttctgataaaaaagaaaaggtcctgtatgtgcta
caaattcatcaagatagtgaacagaatactgctcatgtaagctcagtatcagagtttact
ttagcccagccttgcctgagctttgctatattagatgctggttacaaagagattaaaaaa
nngtctaagggagatgactctcatctagatgaaataactacaggagagatcataaaggaa
gatgttgatgatgaagataagaaggttgaacaaaacacatccagtatctctgtacagatt
aaactttacaccgtccatccaaaggccttacaggaattgctcatcaggttcaaacccgag
tcctccgccccacagcccccaccaccatctgtcagctcagtatcacagagtgaaggtggg
atggtagatgggctctctgacatcagcatgaacatggaaggtagtggagaacataacaag
agtgattctttctccggagctgtcacagaacatgccctgggacaacctgtgcttctaact
ccagatgcttttacttctagtcctagaaagcaatatccagaggacagtatgctagatggt
gtccgaggcagtatgtctagcaccagcagttttacccaggtatctgctatgaatgatgac
ttcctgtcaccaaggagcagctctggtagcaccattacccagactccaaccacgccaaaa
aatggagcccagtccccagctacatccaaaagtgaaacaacaccatcctctatcccgctc
ccacctatttcttccagtgaagagcatgaacttgctactcccacctccactgctagagag
ccagaagtaagggaagctactccaacacctgaggagacacaggaagtagatgatttcttc
cagcagcagacgaccgagaagcgcgacttgcagatggtatcattggacagtacacaaagt
acaggggcatatgaagtatcagaaggaagaatacatggcaagtcacagagttcctatgac
gagatggatgaggaagtggccgaggtcatgggagaggaccaggacgggtattctgagggg
ccaaccgagggtacacaaccatttgaggaaagggaggatactggtcaagtaggtgagagt
acagaatcaagtttgaggatgtggcctaaaccacctgatgttggaggctcaatcaatgag
gttggagatgttgatgacacagagaatgttgatgaagaggaagaagaaggtgaagatgat
gacgacgatgatgatgatgtagtggttgaagaagaagaggagaatgtagtggagggcgag
tcggagggagaaaaagagggcgatgctgatgaggaaatagaagaggagatagaggaggaa
caagaaccctccgaggaaagtatggataacaagagggaaccaatggcagctcctgttgca
ggatcgggctattcctcttcaccaagagacaatagaccagttgaagtgagagaaatacac
agagagactattagagaagtgtttgacacagcagaaatacagaagttacattccagtatg
gctgccatacttcaagctatacagaatcaacaacaacaactggaatttctgaaacacaat
atgtctgctcaacaagaaaattatcttgagttacgacgtcggcagctagaacaggaacag
ttacatcaggtatcggaaggtgctcagccaagtatagaggaacatcttggtaaactagag
aacattgttacatcaagggtagaaagattgtttaaccaacactcacagaaagaaaatcag
agagtacaggatatattgagacaagcagaggctcgtgatgaacgtaagcaagagagatta
cagaatacagtagctacgtcactcgcacaggcagtaaacagtcacatggataaagtagtt
cgtagcactattgttcccagtataacaaaagtattggaacctgtaaaagaccagatacat
caagacatgacacagaaactgacagcagctgattccctcatcagagaaaatgcttcccac
attgccaagacattcagatcacggcaaacagtagaggctgtgggtgtggcagcaggcaat
gccatacaggcaccaatgcaggctgcatatcgagaagcattccagaatattgttatacct
tcatttgagagaactacacaaaacatgtaccagcaagttacagataccttccagaggggt
acaaaagaatatactagacaactggaatcacatctcgacagtattcgacagaaacatgta
gaagcacgtgatccagttgtagcagaattacgaaaacttactgattccttccaaacctca
gctgaacaaatgaaatctcatgtgatagcaacaatacaatctcaactcagtaatgaagtc
cataaatctctatcaaggttacaagatgatatgtcccagtatgtgagggaagctgtgagg
gaagaggtagcggttgctatgagggagcagggaagctccatcagtgatagtgttcttaat
gctatgaggtcaggggcagtgacaccaatgagagcgacccctgaccctcaggtagagaaa
acacacatactgaatctgttacgacaagggcagctaaatgcagcatttcagcaggcattg
tcagcggctaaccttgaacttgtgatgagtctatgtgagacagtaaatccatcacaagtt
ttcaaccagcaaccatgtccgttacatcagcctgtcctcctatcactcatacagcagctg
tcagctgatctagagaatcatacagatcttaaatacaaatacttggaagaagctgtgatg
aaccttgacccccatgattctgtcacacaggaacatatgaaaggagtgttgtatgcccta
aaccaaaaactaagaatatatatcccagctcaccctaatgacaaggtgacaagatcactg
aaaatgttactcatggcctcagagtccttgatcaaataa
DBGET
integrated database retrieval system
