Ruditapes philippinarum (Manila clam): 132723837
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Entry
132723837 CDS
T09557
Name
(RefSeq) 5'-3' exoribonuclease 2-like isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03008
Ribosome biogenesis in eukaryotes
rphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
132723837
09123 Folding, sorting and degradation
03018 RNA degradation
132723837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphi03021
]
132723837
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132723837
03009 Ribosome biogenesis [BR:
rphi03009
]
132723837
03016 Transfer RNA biogenesis [BR:
rphi03016
]
132723837
Transcription machinery [BR:
rphi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132723837
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
132723837
Ribosome biogenesis [BR:
rphi03009
]
Eukaryotic type
Pre-60S particles
RNases
132723837
Transfer RNA biogenesis [BR:
rphi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
132723837
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
DUF5669
Motif
Other DBs
NCBI-GeneID:
132723837
NCBI-ProteinID:
XP_060564615
LinkDB
All DBs
Position
Unknown
AA seq
1020 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIVVHCVEEKTREVNGVKFPVDSSQPNPNDTEFDNLYLDMNGIIH
PCTHPEDKPAPKNEEEMMILIFEYIDRIFSIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEAVETAEEISRVREELLLKGCSVPPEKPASEKFDSNCITPGTPFMFRLANCLRFYIH
DRLNNDAGWKGIKVILSDANVPGEGEHKIMDFIRKQRAQPDHDPNTKHCLCGADADLIML
GLATHEPYFTIIREEFKPNKPRPCSLCGQIGHELKECQGIEKEKSGEFDQKATVFADETP
FIFLRLNILREYLERELLMNGLPFPYDFERALDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLIKLYKNAVRRTGGYLTDSGVVALERVQLIMQELGEVEDEIFKKRRDDEMNFRRRNKE
KRRRNRRFDDKPRYIPGGMLAPQPLGRGRPGVGAPSGNVRQEAYQQRMQNFSTSSSDRDL
ANLDAAQALKAMMNSDNNERGEKRKRENMDSDSDPEPEDDVKLWEDGWKDRYYKNKFDVG
SEDIAFRHNVANHYVRGLCWVLRYYYQGCASWKWYFPYHYAPFASDFVNVAALSNDFEKD
TEPFKPLEQLMGVFPAGSKQHVPPTWQELMTDPKSPIIDFYPINFKIDLNGKKYAWQGVA
LLPFVDEKRLWKALDKVYPDLTDAEIKRNIRGSDRLFVSQSHSVHAFLEALYEEDKSDKT
QLEVNPSQAQGMAGKVWQDEFVYLTGETVKSPLPQLADLEDNRVVSVQYCDPMYKTGFHF
QAKVLPGAVMPDKVLKPEDFDKFNRGNQYRPQLGFQRDSGYRGRRDMGPANRMISDDDII
KIHMHLWRGGANIAPPSSYGNQGGYNQNNRGGVGGYNRGGYSGGYGARQGGGWIPPALPQ
VYPAMNQGSYGYQNNQSGAMNSFQRNTQAQSGGYSRHNQGGGASGYGNGNRNTYGGSYSG
SYSTGNQGGGGGGGGSQYGGSYSTSQGGSGGGNRNQQGDRDNRYGNNNNRGYPMPPGYRR
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcgttttttcgctggctcagtaggaaatacccgtcgattgttgtacac
tgtgtggaggaaaaaacaagagaggtgaatggtgtgaagtttcctgtagattcaagccag
cctaatccgaatgatacagaatttgataatctctatctggatatgaatggaatcatacat
ccctgtacccatccagaagataagccagctccaaaaaatgaagaagaaatgatgattctc
atatttgagtacatagacagaatattttctattgtgcgaccaagacgggtgttgtatatg
gcaatagatggcgtggctccaagggccaaaatgaatcagcagaggagtagaagattccgg
gcttcaaaggaggcagttgagacagcagaagagatatcccgtgtcagagaagagttgtta
cttaaaggttgtagtgtccctccagaaaaaccagcttctgaaaagtttgacagcaactgt
attacaccaggtacacccttcatgttccgacttgccaactgtcttcgattctacatccat
gatagattaaacaatgacgctggctggaaaggtattaaggtaattctgtcagatgccaat
gttccaggagagggggagcataaaatcatggactttatccgaaaacaaagagcacaacca
gaccatgatccaaacactaaacactgtctctgtggggccgatgctgatttgatcatgtta
ggtctggctacacatgaaccatactttaccatcatcagggaggagttcaagccaaataaa
ccacgcccttgcagtctgtgtggtcagattggtcatgaactgaaggaatgtcagggaata
gagaaggaaaaaagtggcgagtttgaccagaaagcaactgtgtttgccgacgaaacacct
ttcatatttctacgcctaaatatacttcgagaatatttagaaagagagcttctgatgaat
ggcctgccatttccttatgacttcgagagagctttagacgactgggtatttatgtgtttc
tttgttgggaatgatttcttaccacacttgccatctctagaaataagggaaggtgcaatt
gacagattgataaagctgtataagaatgctgtcagaaggactgggggataccttacagac
agtggtgttgtggccttggaaagagttcagcttattatgcaagaactgggagaggttgaa
gatgagattttcaagaagagacgtgatgatgagatgaatttccgcagacgaaacaaagaa
aaacggcgtagaaatagaaggttcgatgacaaacctcgttatatccctgggggcatgctg
gcgccacaacctttgggacgaggacgacccggtgtgggtgcaccttcaggaaatgtgaga
caagaagcatatcaacaaagaatgcaaaacttctccacatcctcgtccgacagagatttg
gcaaacttagatgcggcgcaggcgctcaaagcaatgatgaattctgataataacgagaga
ggcgagaaacgtaaacgtgagaatatggacagtgacagtgatcctgaaccggaagatgat
gtcaaattgtgggaagatggctggaaggacagatattacaagaacaaatttgacgtggga
tctgaagatatagctttcagacataatgtggctaatcactatgtgagagggttatgttgg
gttttacgttactactatcaaggctgtgcctcgtggaagtggtatttcccctatcattac
gcaccttttgcttccgattttgttaatgttgctgccttgtcaaatgattttgagaaggat
accgagccatttaagccactagaacagttgatgggcgtgtttccggcaggaagtaaacaa
cacgttccacccacctggcaggaattgatgacagatccaaaatctccaattattgatttt
tatccaatcaacttcaagatagatctcaatggcaaaaagtatgcttggcaaggtgttgcc
ctattaccatttgtggatgagaaaaggttatggaaagccttggacaaagtctatccagat
ctcacagatgctgaaataaaaagaaatatccgagggagtgacagattgtttgtgagtcag
tcacattcagtacatgctttcctcgaggcactgtatgaggaagacaagagcgataaaact
caattagaagttaatccgtcacaagctcagggcatggcaggcaaagtatggcaagatgag
tttgtgtacctcactggcgaaactgtgaaaagtcccttacctcagctagcagatcttgaa
gacaatagggttgtaagtgtacagtactgtgaccctatgtataagacaggattccatttt
caagccaaagttttgcctggagctgttatgccagacaaagtgttaaaaccggaggatttt
gacaagtttaacagaggtaaccagtatcgtccccagctcggctttcagagagacagtggt
tacaggggacgtagggacatgggaccagcaaatagaatgatcagtgatgatgatattatt
aaaatacacatgcatttatggaggggcggtgccaatatagctccaccttcatcctacggt
aatcaaggtggctacaatcaaaataatagaggtggtgttggaggctataacaggggaggt
tacagtggcggatatggtgccagacaagggggaggttggataccaccagcgttacctcaa
gtatacccagccatgaatcagggcagctatggttaccagaacaaccagtctggggcaatg
aattctttccagagaaatacgcaggcccagtccggaggttatagtagacacaatcaagga
ggcggggcttcaggatatgggaatggtaatagaaatacatacggtggatcttacagtgga
tcatatagtactggcaaccaaggtggtggtggtggtggtggtggttcccagtatggggga
tcatactctacatcacaaggtggtagtggtggtggaaacaggaaccagcaaggagacaga
gataataggtatggaaataacaacaacagaggttaccccatgccccctgggtatagaaga
tga
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