KEGG   Ruditapes philippinarum (Manila clam): 132723890
Entry
132723890         CDS       T09557                                 
Name
(RefSeq) poly(U)-binding-splicing factor PUF60-like isoform X1
  KO
K12838  poly(U)-binding-splicing factor PUF60
Organism
rphi  Ruditapes philippinarum (Manila clam)
Pathway
rphi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rphi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    132723890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rphi03041]
    132723890
Spliceosome [BR:rphi03041]
 Complex A
  U2 snRNP components
   U2 related factors
    132723890
 Complex B
    132723890
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_occluded
Other DBs
NCBI-GeneID: 132723890
NCBI-ProteinID: XP_060564676
LinkDB
Position
Unknown
AA seq 593 aa
MATAAELGFTSVLPSTQNGTFNGVGQVGVVGFGMGDGLSFKVKLEDDIPQSDMSGPVLEG
PGAKRELKPFTLPKLTSSQQDALQSAKKYAMEASIKSVLVKQTIAHQHQQMQNFQNTVQR
QQALALMCRIYVGSINFEIKEDTIKQAFLPFGPIKSVNLSWDPITNKHKGFAFIEYDIPE
AAQLSLEQMNGVMIGGRNIKVGRPSNMPQAQPIIEQIASEAKNYNRIYIASIHPDLTEKD
ISSVFEAFGKIVSCMLIKDPTSKGGLRHKGYGFIEYTNSQSATDAVASMNLFDLGGQYLR
VGRAITPPDVLMQPQTPGLGAMPTAAAVAAAAVTAKITAMDAQQQLIPPGVVNPTQLGVT
GSPKLGLQADLNMIGGPGVVIPQSLGIAPPTVANIPPPGVVTAGLAGPKALPKVSSMMPP
TTGNSLQAAISSMVDSDSEKRREKEKEKEREKKEAEKKMAEEEVNQTLEQQETMKISGSN
ARHMVMQKLMRQSQSRVMVLKNMVGPEDLDDELQAEVSDECGKYGQVNRVIIYQERQGEE
DDAEVIVKIFVEFSDSAEVEKGCQSLNGRWFGGRLVQAEKYDQDLFDANDLSG
NT seq 1782 nt   +upstreamnt  +downstreamnt
atggcgaccgcagcggaattgggatttacgagcgttcttccaagtacacaaaatggcaca
ttcaatggggttggtcaagttggagttgttgggtttggaatgggtgatggtctgtccttc
aaagtcaagttagaagatgatattccacagtcggatatgtccgggcctgttctggagggt
ccaggagctaagagagagttgaaaccttttactttaccgaagctgacctcatcccagcaa
gatgctctccagtctgcaaagaagtatgccatggaagccagtataaagagtgtacttgtg
aaacaaaccatagcccatcaacatcagcaaatgcagaatttccagaacacggtacaaaga
caacaggctttggctctgatgtgcagaatatatgttggaagtataaactttgaaataaaa
gaagacactataaaacaagcgttcctgccatttggtcccatcaaaagtgtgaacctgtca
tgggatcccattacaaacaaacacaaggggtttgcgttcatagagtatgatataccagag
gctgctcagttgtcactggaacagatgaatggtgtaatgattggtggcagaaatataaag
gttggtcgacctagcaatatgccgcaagcacagcctattatagagcagattgcttcagaa
gccaaaaactacaatagaatttatatagcctctatacatccagaccttacagagaaagac
atctctagtgtgtttgaagcatttggaaaaattgtaagctgtatgctgattaaagatcca
acatctaaaggtggactaagacataagggttatggttttatagagtacacaaattctcaa
tctgcaactgatgctgtggcatccatgaatctgtttgatctgggaggacaataccttaga
gtggggagagcaataacgccaccagatgtattaatgcagcctcagacaccaggtcttggc
gctatgccaacagcagcagcagtagcagctgcagcagtcactgctaaaataacagcaatg
gatgctcaacagcagcttattcctccaggcgtagtaaacccaacccagttgggtgttaca
ggtagcccaaaattagggttacaagctgaccttaacatgattggtggccctggtgtagtt
ataccacagtctctaggcatagctccgcccactgtggcaaatattccaccaccaggtgtc
gtcactgcaggcttggcgggacctaaagctcttcctaaagtatcatctatgatgccgcca
acgacaggaaacagtttacaggctgcgatctcatcaatggtggactcagattcggagaaa
agacgagagaaggagaaagagaaagaacgagagaagaaagaagctgagaagaagatggcg
gaggaagaagtaaatcaaacattagaacaacaagagacgatgaagattagtggtagtaac
gcgaggcacatggtgatgcagaaattaatgagacaatctcagagtcgagtaatggtatta
aagaatatggtaggtccagaggatttagatgatgagttacaggcggaggtatcggatgaa
tgcggcaagtacggacaggtgaacagagttattatatatcaggaacgacagggagaagaa
gatgatgctgaagttattgtgaaaatatttgtagaattcagcgattctgctgaagtggag
aaaggctgccagtcattaaatggacggtggttcggtggacgacttgtgcaggcggaaaaa
tacgatcaggatttgtttgatgcaaatgatctctcgggttga

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