Ruditapes philippinarum (Manila clam): 132724252
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Entry
132724252 CDS
T09557
Name
(RefSeq) paraspeckle component 1-like isoform X1
KO
K13219
splicing factor, proline- and glutamine-rich
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rphi01009
]
132724252
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphi03021
]
132724252
03041 Spliceosome [BR:
rphi03041
]
132724252
Protein phosphatases and associated proteins [BR:
rphi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
132724252
Transcription machinery [BR:
rphi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132724252
Spliceosome [BR:
rphi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
132724252
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
NOPS
RRM_occluded
RRM_7
Motif
Other DBs
NCBI-GeneID:
132724252
NCBI-ProteinID:
XP_060565068
LinkDB
All DBs
Position
Unknown
AA seq
625 aa
AA seq
DB search
MASAVGKTPPKPAVDNKKEESTPNKPNQNDRKSQEKDTKDIKNEGPQQDNRNRNQNRFNN
NDNRFQNRRGGRGNQNNQGRFNQRGPNQNRDTSRDSGNPFEPAGDFYGEQNEAPKEQKKF
TGRCRLFVGNITPEVTEEQFKEMFTPFGEVSEVFVNAARGFGFIRLDYRINAERAKMELD
GQMRNNRVLRVRFATHGAALKVFNLSPFVSNELLEQAFSQFGEVERAIVCVDDRGRSCGE
GIVEFARKPGAQSALKRINEGVFLLSAYPRPVRVEMLEQRDEEDGLTEKFVQRNDGFRKD
REKEPRFAPPGSFEFEFGMKHRQIDDMEKERSERIKQDMESERTRLAEEMETAIFDYQAD
QIRQDLMRQQEELKRLDEMKNEHMRRRQEMDLRRREQMQGGMGDNMMRQEEERRREMMMR
ASNAMSRDRDGNMNQGPQGQNRGPSGRPDDMMMRGGPGGQGGPGGPGGMRDQGNQRGPGT
PPMPPPPVPPGMNMEQNRPGGGNMERFGPGGVSPGMDQPNMERPPPGMPGNMKGDNMQRP
GPGPQGQPPGGRFQGPPGPGGPPGGPGNFGGPGGMGGPGGNMFPKMPGPGHMGPGGPPGN
QNMRGNDRRDPVRRDDFDNKRMRRY
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcagctgttgggaaaactcccccgaaacctgcagtggataacaaaaaagaagaa
agtactccaaataaaccaaaccaaaacgatagaaaatctcaagagaaagatacgaaggac
attaaaaacgaaggcccccagcaagataaccgtaacagaaatcaaaatcgatttaataat
aacgataatagatttcaaaacaggagaggcggtaggggaaaccagaacaaccagggtagg
ttcaatcagcgtggtcctaaccaaaatagagatacttcaagagatagtggaaatcctttt
gaacctgcaggagatttttatggggaacaaaatgaagctccaaaagaacagaagaagttt
acaggcagatgtagactatttgttggtaatatcacaccagaagtaaccgaagaacaattc
aaagagatgttcacaccatttggagaagtctctgaggtgtttgtaaatgctgccaggggt
tttggattcatacgcttggattatagaataaatgcagaaagagctaaaatggagttggat
ggacaaatgcgcaacaatcgtgttttaagggttagatttgctacacatggagctgctttg
aaagtatttaatttgtccccttttgtatcaaatgaacttcttgagcaagctttctctcag
tttggtgaggttgagcgtgcaatagtttgtgttgatgacagagggaggtcatgtggagag
ggaattgtggagtttgctagaaaaccaggtgcacagtctgcccttaagcgtatcaatgaa
ggtgtctttcttttgtcagcgtatccaagaccagtccgtgtagaaatgcttgaacagaga
gatgaggaagatggtttaacagaaaaatttgttcagcgaaatgatgggtttaggaaagac
agagaaaaagaaccaaggtttgctcctccaggctcatttgagtttgaatttggcatgaag
cataggcagatagatgatatggaaaaagaaagaagtgaaagaattaaacaagatatggaa
agtgaaagaacaagattggcagaggaaatggaaactgctatctttgattaccaggctgat
caaatcagacaggacttgatgagacagcaggaagaattgaaaagactggatgaaatgaaa
aatgagcatatgagacgaagacaggaaatggatctcaggagaagagaacaaatgcaggga
ggaatgggagacaacatgatgaggcaggaagaggaacgaagacgagaaatgatgatgcgg
gcatctaatgctatgagtagagatcgtgatggtaatatgaatcagggacctcaagggcaa
aatagaggaccgagtggccgtccagatgatatgatgatgagaggagggcctggaggtcaa
ggcggcccaggtggccctggtggtatgagagaccaaggtaatcagaggggcccaggcaca
ccaccaatgcctccaccccctgtaccacctggtatgaatatggaacagaacagacctggt
ggtggaaatatggaacgatttggaccaggaggtgtgagccctggaatggaccagcccaac
atggagagaccacccccaggcatgccaggcaacatgaaaggcgataatatgcagcgtcca
ggcccaggacctcaaggacaaccaccaggaggacgtttccaagggccaccaggcccagga
gggcccccagggggaccaggtaactttggtggccctgggggtatgggtggcccagggggc
aacatgtttccaaaaatgcctggaccgggacatatgggtcccggtggaccgccaggtaac
cagaatatgcgtgggaatgatagaagagatccagtgagaagagatgattttgataataaa
agaatgaggcgttattga
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