Ruditapes philippinarum (Manila clam): 132724381
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Entry
132724381 CDS
T09557
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03030
DNA replication
rphi03410
Base excision repair
rphi03420
Nucleotide excision repair
rphi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
132724381
03410 Base excision repair
132724381
03420 Nucleotide excision repair
132724381
03430 Mismatch repair
132724381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rphi03032
]
132724381
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132724381
DNA replication proteins [BR:
rphi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
132724381
DNA repair and recombination proteins [BR:
rphi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
132724381
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA
BRCT
AAA_22
RuvB_N
BRCT_2
AAA_5
nSTAND3
AAA_16
PTCB-BRCT
AAA_19
AAA_33
AAA_14
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
132724381
NCBI-ProteinID:
XP_060565216
LinkDB
All DBs
Position
Unknown
AA seq
1171 aa
AA seq
DB search
MSKSDIRNFFSLGAAKKTENRSTAEKSKDSDTGLTKIKNGKEHHKNDLPISNKVNTKDSD
INGNKKNENDSKKKKESKSRDKSRDKIDCKNKSRKSDKKVDIDISEDVIEIDDDSLPEAP
VKDKKKDKAKKKGQEKDVEEVPVEKKKGKKRKKEVSSDDDFDVKIEDDDDDDMVVRKSKT
MKKKGKKIQKLLDSDSDEDPFPKDKKQKKSKKKQTVVHIGGAEECIEEEVKPKKTFLDNF
LTSPSPSKTAKRKTEAEKQEVKGQEVKVTDFFGKSSIHRVERKIIHVERKPEKKEEKKDS
ISMEVDDIEMHSDDEFERTLELLDEEAITCSKKTEDIKAEKSEPVKEEKGFLKKNQSHSP
KKAKMEFVMHRTERKADKSPTKPKDSPTKPKESPTKPEMKTPPRKTPEKGDNKTGSAEKK
ISPAKTDSNTPGTKGTGYRSYLNRAGPQALGSKEIPEGAENCLEGLTFVITGVLESFERD
ESKSMIERYGGKVTGNISKKTDYLVAGRDAGQSKMTKVYTEPDQTTQKWKENSMNKTPSG
KLDSFKRDNTTESESVSRLQSSSSRSNSQSESTSHDQSVNRNKIHTDNPQSSLLWVDKYK
PTQMKQIIGQTGDKSNAKKLLHWLNNWHKNQSAGVKPVTGKFFGRGGSDDGAGFKAALLS
GPPGIGKTTTATIVCKEAGFSFVELNASDTRNAKSLKEVVSQSVGNTSIVDYIGSGSSTT
HGLKHCLIMDEVDGMSGNEDRGGVQELVNLIKNTKIPIITMCNDRNHQKMRTLSNHCFDL
RFQRPRVEQIKAAVMSIAFKEGLKIPPPAVNEIILAANQDMRQVIHNLSMWTAADKVITY
DQVKTDAQHAKKDMKIGPFDVCRKVFVGGEETNKMTINDKSDLFFHDYNIAPLFVQENYI
HVIPYAARGSASRHLSLLARSADALCVGDVCERRIRTSQSWGLLPLEAMYASVLPGEYMR
GNITQMISFPSWLGKNSTTGKNERILQELRTHMRLQISGDKKSLNLDYLPFLRQSLTEPL
VKKEAEGVPDVIKLLDDYDIVKDDFDNIMDITKWPNSKDPLSQLSTKTKSAFTRTYNKEV
HMTPYSTGVATKKKRGGGGASTDELDLLGEGEEGGGANEEEEEEDKDDLETDTMIKKKTK
AASSTSGKGKGKGPAKGKGESKAKGKGKGKS
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatcagatataaggaatttcttcagcttaggtgcagccaagaagactgaaaat
aggtcaacagcagaaaaaagtaaggactctgacactggtttgacgaaaatcaagaatggc
aaagaacatcataaaaatgaccttcccatctcaaataaagttaatacaaaagacagtgat
ataaatgggaataaaaagaatgaaaatgattctaagaagaaaaaagaaagcaaaagtagg
gataaaagtcgtgataaaattgactgtaaaaacaaatcgagaaaatctgataagaaagtg
gacatagatattagtgaagatgtcattgaaatagatgatgattctcttcctgaagcacct
gtgaaggataaaaagaaagataaagcaaagaaaaaaggtcaggaaaaagatgtggaagaa
gttcctgttgagaagaaaaaaggaaagaaaagaaagaaagaggtatcaagtgatgacgac
tttgatgtaaagattgaagatgacgatgatgatgacatggtcgttagaaaatcgaaaacc
atgaagaagaaaggaaagaaaatacagaaacttctagactcagattcagatgaggaccct
tttccaaaagacaaaaagcaaaaaaaatccaagaagaagcagacggtggttcatatagga
ggagctgaagaatgcattgaagaggaggttaaaccaaagaaaaccttcctggataatttt
ttaacaagtccaagcccaagtaaaacagctaaacgcaagactgaagcggaaaaacaagag
gtgaaaggtcaggaggtgaaagttacggatttctttggaaagtcatcaatacatcgagtg
gagagaaagattatacatgttgagagaaaaccagaaaagaaggaagagaaaaaggacagt
ataagcatggaggtagatgacatagaaatgcacagtgatgatgagtttgaacgaacttta
gaacttttagatgaagaggcaattacctgttctaagaagacagaagacattaaagcagag
aagagtgaacctgtgaaagaagagaaagggtttttaaagaaaaaccagtctcactcgccc
aagaaagccaaaatggaatttgttatgcatcgtactgagagaaaagcggacaaatctcca
acaaagccaaaggattctccgacaaagcccaaggaatctccgacaaaaccggaaatgaaa
acgcccccaaggaaaactcctgaaaagggagataataaaaccgggagtgcagagaagaaa
atcagcccagcaaaaactgactctaatactccaggcactaaaggtactggctacaggtcc
tatttgaatagagctgggccacaggctctaggctctaaggaaattcccgagggagcggag
aattgtttagagggtctgacatttgttataactggtgtactagagtcatttgagagagat
gaatcaaagagcatgatagagcggtatgggggcaaggtgactggtaatattagcaagaag
accgactacctagtagcaggaagagatgctggacaaagtaaaatgactaaggtatataca
gagcctgatcagacaacacagaagtggaaggagaattctatgaataaaacaccaagtggg
aaattagattcttttaaaagagacaatactacagaatctgaaagtgttagtagattacaa
agttcatcatctaggtcgaatagccagtcagaatcaactagtcatgaccaatcagtgaac
agaaataaaattcacacagacaatcctcagtcctcgttactgtgggtcgacaaatataaa
ccaactcagatgaagcagataattggtcaaactggtgataaaagtaacgctaagaaatta
cttcattggttaaataactggcataaaaaccagtcagccggggttaaaccagtgacggga
aagttttttggacgtggtggaagtgatgacggggcgggatttaaagcagcgttgctgtcg
gggcctccaggtataggaaaaacaacaacggcaacaattgtgtgtaaagaagctggcttt
tcttttgttgaattgaatgcctctgatacaaggaatgctaaaagtttaaaggaggttgtg
tctcagtctgtaggtaacacaagtatagtagactacattggatctggctcatcgaccaca
cacggactcaaacattgtttgataatggacgaggtggatggtatgagcgggaatgaggac
cgtggaggcgtacaggaattagtgaatttgattaagaacacaaaaattccaataatcaca
atgtgtaatgacagaaaccatcaaaaaatgagaactctatcaaaccattgttttgatctg
cgatttcaacgacccagggtggaacaaattaaagctgctgtgatgtctatagcttttaaa
gagggtctgaaaattccccctccagctgttaatgaaattatactggcagctaatcaggat
atgagacaggtaatacataatttgtccatgtggactgcagcagacaaggtgataacttat
gatcaagtcaagactgatgcacagcatgccaagaaagacatgaaaattggaccatttgat
gtttgtcgtaaagtatttgtaggtggtgaggagacaaataagatgaccataaatgataaa
tcagatttgttcttccatgactacaacatagcgccattgtttgtacaggagaactatata
catgttataccatatgcagcgaggggtagtgcaagtcgtcatttatcgttgttggctagg
tcagctgatgcactatgtgttggtgatgtctgtgaaaggagaatccgcacaagtcaaagc
tggggtcttttacctttagaggcaatgtatgctagtgtgttaccgggagaatatatgagg
ggcaacatcactcagatgatctcgttcccaagttggcttggtaaaaactctacaacaggg
aaaaatgaaagaattttacaagaattaaggacgcacatgaggcttcagatatcgggggat
aagaaaagtttgaacctagattatctcccatttctacgtcagtccctcactgaaccttta
gtaaagaaggaggcagagggtgtaccagatgtaattaagttattggatgattatgacatt
gttaaagatgattttgataacattatggatattacaaaatggccaaatagtaaagatcct
ttaagtcaacttagtacaaagacaaaatcagcatttacccgtacttacaataaagaagtg
catatgacaccatactcaacgggagtggctacaaagaagaaaagaggaggaggtggagct
agcacagatgagctggatttgctgggtgaaggggaggaaggaggcggggctaatgaggaa
gaggaggaggaagataaagatgatttagaaacagatactatgataaaaaagaaaacaaaa
gccgcatcttctacaagtggtaaaggcaaaggaaagggtcctgcaaaaggaaaaggggag
tcaaaggccaagggaaaaggaaaaggaaaatcatga
DBGET
integrated database retrieval system
