Ruditapes philippinarum (Manila clam): 132724806
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Entry
132724806 CDS
T09557
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rphi03009
]
132724806
Ribosome biogenesis [BR:
rphi03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
132724806
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
wHTH-PRTase_assc
Motif
Other DBs
NCBI-GeneID:
132724806
NCBI-ProteinID:
XP_060565752
LinkDB
All DBs
Position
Unknown
AA seq
2922 aa
AA seq
DB search
MGKSGHHKKENTFRFQTFSERITNINIDVIHQIRHHDDTPEETLSYFGEALHKQSELNCT
DHFAHFKKEISDQVQTFAQLVYHEENIVSALKKHLLVPNSMALPAILDLLVQLARDLQTD
FYKHFHEFFDILVTLLNTYSKDVEVLESTFTCLSYIFKFLWRYLLKDIQLVYRYFSSLLS
KQYKEYVRNFAAESFAFLMRKSKDPSALFDFLFSTLEEEPDKAEGLGRLLFEMMKGVKEQ
FHSCTEKVFPILLRKLGPGEKQHVLPWQQVEVSMTTLIVSMAGHSNREHMAQILDLLLSS
ISETYSRFDNKKKISEKLKVTDTLERQLRLLKTLVEYNNGKLITKPDNIAKVLIEIVRGP
SLPESTGLVILDMSGCLLITSHSKLEIENTSKLLPAVFKTSYPVGMIYDFTRRLFDLALF
EKDVLPSLLKYCDNCMTGSDIIQEQTLLLITQLLLNKCPLPADGSQIDQMETYMLDFGTG
SLKNNFPGYISKCLEVSFETGNFTSVTKIWAALVCVPHVRPLKEKGKHLEMLSKLIQELM
NSEVDVIEDRENTEFLASQVLVSMVTMTDDTDLFEHVPLDTVIKCVCNKSKSVHILRLVD
IYFTHAVNTKYEDVLSADILLKIFPILQENLSSPHSLVRLHTLRIFSSFDLPLPPNDFEV
LDVFKICLCAETTPANVHEYREKLRHLQKLDYTTVQNSIPAGPFSQVPLRYLIGSLFVKF
KLLWEPIRTLISSHAHNMERDVFWEIYSVQLEVASTKAEEELFCNVHSKKTEVGDEQIDS
VESMFKHSVQELNGSEEISPSYSNFRVQLWKTMHEFPEKCSSKSRVFVPLLFRFLSNEYY
LTDLSVAPSQNVLKKTQDPDDMDTDETGAIDSINISKESYRKAKDGNESESDDSSDEDIE
NVKPNTRNRTRKIKMDGTEDNGNSESIHRVRTRSQCSVDGELHESKETSRKLRTRDRKHS
DVEESDLDSSKSVKKGNLTRIRTRSMGDSESEIKVDKLKDKVDKSKKASPVRRMRTRSSK
LDSSDEEMFNDEDDDSDDDEGDEEERMNEEEESDGDVEMNEVDDKRKGKKRLSAIHESED
EMEIDEAENDNLDVDKHADEGKNKKVGRKGDKSSKQDEGIAVVKKQRKAAAGSLLVQLEL
FAKFKDPKSMYMEPQLRQLYFDLLIHKDADVQRTAFQCILTYKFKYLTPYRDNFNRLLED
KSFKNEIVLFSIDHENSVIDKDHRAEVLPILMRILYGKMQVKTGKGTAGKQFSKIRQSIV
LRFLNGCQNEELKIFIDLVFAPCQQFITDNPYKMALDLKEHTDLTNVLPVKKMQGALNSI
DMIFKKLGHLMDSFLPSIIQMIVGLGTLCSVLLENRDRLVPHVINPLKDIRQNSIYRMIQ
ILEDYDKYPWRPVELDAMFEALVWPQLDKLSYEGLYHPTPLLKLLIQCSKHPRYFSLLGK
HHKDSVELSPLPQVMKLLLKKSVSSHVTSSIMEMVYNLLEEIDEEEDIKVIEVNHMIHLS
SAENVKESDIGIRLLLPHIPDILLYIESFVSTLNTKLHKKSKISGKELDILSRVSSFVKD
EEISATLVDLLLPFLNPKYSKPQKVEEDILTSIMNLLKRISDRMQFFKPISKLFALLPQR
PSRLLLTEAFMVICEVEEDLKPLGVIVQQLNSWDRTRMDEPDYMLRLEGYRSANGLLKGM
VAMDTRICLTLIYNCCFFISTVEDMSLRDSSTLCMVTMVKQFGEVPFDEEVYKKVIILTL
LHQVKTGFRSKKQTVFHEFVTILATMVDIFGDQATFTDLKPLRDKDIEADFYENIKHIQV
YKRSRALRRLIKYLYSNKVNHDTLTNIFLPMVSSFLIDDIYKKHPTVLDAAIDGIGTICK
LLPWKSYLNQLRHYLILLSRKLEKQKLLVRVIVSVLDNFHFDLRNSTLNWKKTPVPKVER
EPEEQKDLKPEDVDKDKEKEEVDTDKIEEAEEPVVEINEEEESTVVEEDKGKQICSEPLA
TKIHGTILKSVIHQLHRILVQKARSDGEHKVVKSKYAEDEEILRVPISLAMVKLLQNLPR
GALGRYLPGVLLKVCNFLKSRSIEIRNTSRDTLVKIQMTLGPRFFPFILSELRGTLRRGY
QRPVVLQVLNEEIFGEVSDEKDVEGIKAKVFEARSSKSYESYEFIARYISPGSLMKLLDP
IKKILDSTSSHKSARKVQELLKRVTAGLLDNKTVTTETLLIFVHSLTTQNLPMLSEEKPA
PKVEKTESRPGKQPQSCLLIPKAAPRGGLKPKAHKKTNIHVLVEFGLQLLSMCLKKQKIV
KSDSTHIQMLDPLVPMLADCLFSKYVMVNAYSLRVLCKILKFPIPSLKKRMSRISSGMFI
LLRNYASAGAARGDNLELVSMLFKAVTVLVREVKYYKIKSDQLQVLLTFCEEDIHDFSRQ
STAFSLLKGILSRKLDVPEIHELMKKVEEMSISAETAHVQRECRQAMMQYLLDYSHGKKI
KDHLQFYVSNLTFELESGRESALEMLASFFTSFPQNLLAEYSGLFFVPMAACLANDESVK
CRKLIALAIKTLLGKLDHNARTGLFTIAMKWFMDEKLRHRSLAAQLCGLFVEVESAQFES
RLSDTLPVIEQQLEPGKYKQAEEASLEHDQDLMIYHTLNTLLKILRECSQVVTSPKWESS
MNVIWEHVESYLSYAHIWVQLAAAQLFGLLFAAWQPEQLVTMETKTSTQYITTDTYKKLR
TLANDFLAQLQSELLNDELANQVIKNMIFLMKCARQMAKVEQERGDIEEDEEKEKGLSVV
WLVRKMVREANHEAINNNKMIIKRIHVFKWLAAVSVDMGDNMETNVLNSMLPPLQRELND
QSMYQDASLRSLAQEVVDLLKKTVGVEKFTGSYASTQKVRAERRDERKRQRAFQAVANPE
LHAKRKLKKNLNKIEAKKRKIEQYKPSKKAKKRKYQEFAITD
NT seq
8769 nt
NT seq
+upstream
nt +downstream
nt
atggggaagtcaggacatcacaagaaagagaatacttttaggtttcaaaccttttctgaa
aggataaccaatataaatattgatgtcattcatcagatacgacaccatgatgacactcct
gaggaaactttatcatactttggagaagctctgcacaaacagtcagaactcaactgtaca
gatcactttgctcatttcaagaaagagatttcagatcaggttcagacatttgctcagctt
gtctaccatgaggaaaacattgtatctgcccttaagaagcatcttcttgtcccaaacagc
atggccctgccagctattctagatttgttagtgcaattagctagagacttacaaacagat
ttttacaagcatttccacgagttctttgatattctagtaactctattgaatacatacagc
aaggatgttgaagttctggagagcacgttcacctgtctgtcatacatcttcaagtttcta
tggagatacctgctgaaagatatacaacttgtatacagatatttttcatctctgcttagt
aaacagtacaaagaatatgttcgaaactttgctgctgaaagttttgcatttctcatgaga
aagtcaaaagatccttcagctttgtttgacttcttgttttctactctagaggaggagcca
gataaagctgagggccttggaagactgctgtttgaaatgatgaaaggagtaaaggaacag
ttccatagctgtacagagaaggtttttcctatactgttgaggaagctggggccaggggag
aaacaacatgtattaccatggcaacaggtggaggtttctatgacaacattgattgtttct
atggcaggtcattccaacagggagcacatggcacagatcttagatttgctattgtcatct
ataagtgagacctacagtaggtttgacaataagaagaaaatctcagagaaacttaaggta
acagacaccctggagaggcagttaaggttgttgaaaaccttggtggaatataacaatggg
aaattgataactaagcctgacaacatagcaaaggttttgatagagattgtaaggggaccc
agtctaccagaatcaactgggctggttatactagatatgtcaggatgtcttctgataacc
agtcactctaaacttgagattgagaacacatctaaacttttacctgcagtatttaagacc
agttatccagtgggtatgatatatgactttacacggaggctgttcgacctggccctattt
gagaaagatgtgctaccgtccctactcaagtactgtgataattgtatgacaggaagtgac
atcatacaggagcagacattgttattgataactcaattattgctgaataaatgtcccctg
cctgctgatggcagccagatagaccaaatggaaacatatatgttggactttggaacaggg
tcattaaagaacaactttccagggtatatttcaaagtgtttagaagtaagttttgaaaca
ggtaactttacaagtgtgacaaagatttgggcagctctagtttgtgtgcctcatgtcagg
cctttaaaagaaaaaggaaaacatttagagatgctgtctaagttgatccaagaattaatg
aacagtgaagttgatgttattgaagatagagaaaatactgaattcctggcaagccaggtc
ctggtttctatggtgacgatgacagatgatacagacttgtttgagcatgtacctctagac
actgtcatcaaatgtgtatgtaacaaaagcaaaagtgttcatatactgaggctggtagat
atatacttcacacatgcagtaaacaccaagtatgaggatgttctaagtgctgatatctta
ctgaaaatattccctattctacaagaaaacctctcctctcctcactcactggtgcgttta
catacattgagaatattttcaagctttgatctgcctttaccaccaaatgattttgaagtg
ttggatgtattcaaaatttgtctgtgtgcagagaccactccagcaaatgtgcacgaatat
cgtgagaaacttcggcaccttcagaaattagactatacaacagtacagaacagtatacct
gctggaccattcagtcaggttcccttgagatatttgataggaagcctgtttgtgaagttt
aaactgttgtgggaaccaatcagaacactgatttccagtcatgctcacaatatggagaga
gatgtattctgggaaatttattctgtccagttagaggtggcctcaactaaagcagaagaa
gagttgttttgcaatgtacattcaaagaagacagaagtaggtgatgaacaaattgacagt
gtagaatcaatgttcaagcactctgtacaagagctgaacggcagtgaagaaatttctcca
agttacagtaactttagagtacaattgtggaaaactatgcatgaattcccagagaagtgc
tcatcaaaatctagagtctttgttcctttgttatttagatttctgtcaaatgagtactat
ctgaccgatttaagtgttgctccaagtcagaatgtcctgaagaaaacacaagatcctgat
gatatggacacagatgaaactggggcaatagattcaattaacatttcaaaagagtcatat
agaaaagctaaagatggaaatgaaagtgaatctgatgactctagtgatgaggatatagaa
aatgtaaagccaaataccagaaatagaacgaggaagattaaaatggatggaactgaagat
aacggtaacagtgaaagtattcatagagttagaactagaagtcaatgtagtgttgatggt
gagcttcatgaatctaaggaaacaagtagaaaattaagaactagagatagaaaacatagt
gatgtagaagaatctgatcttgattcaagtaaatcagtgaaaaagggaaacctgactaga
ataagaactagaagtatgggagatagtgaaagtgagataaaagtagataaattgaaggat
aaagttgataagtctaagaaagctagtcctgtcagaagaatgaggaccagatcttctaaa
ctggattccagtgatgaagaaatgtttaatgatgaagatgatgatagtgatgatgatgaa
ggtgatgaggaggaaaggatgaatgaggaagaagaaagtgatggtgatgtagaaatgaat
gaagtggatgacaaacgtaaaggaaagaaaagattaagtgcaatacatgaaagtgaagat
gaaatggaaattgatgaggcggagaatgataatttagatgttgataaacacgctgatgaa
ggaaagaataagaaagttggaaggaaaggtgataaatcaagtaagcaagatgaaggtata
gctgttgttaagaagcagaggaaagctgcagcaggatctctgttagttcaactggagttg
tttgcaaaatttaaggatccaaagtcaatgtacatggaacctcaactaagacagctttat
tttgatttgctaattcacaaagatgcagatgtacagcggacagcctttcagtgtatttta
acctacaagtttaagtaccttacaccatatagggataacttcaacagacttctagaggat
aagtcattcaagaatgagattgtactgttcagtatagaccatgagaacagtgttatagat
aaggatcatagagccgaggtgctccctatactgatgagaatattatatggaaagatgcaa
gtaaagacggggaagggaacagctggtaaacagttcagcaagattcgacagtctattgta
ttacgtttcctgaacggctgtcagaacgaagaattgaaaatattcatcgacttggtgttt
gctccatgtcagcagtttataactgataacccctataagatggcactcgatctcaaagaa
catacagatttaaccaacgtattacctgtgaaaaaaatgcaaggggccttgaattcaata
gatatgatctttaagaagctaggtcacttgatggattctttcttgcctagtattatacag
atgatagttggactgggtacactttgttctgttctgctggagaacagagatagactggta
ccacatgtgataaatccactcaaggatattagacaaaattctatttatagaatgattcag
atactggaagattatgacaagtatccatggagaccagttgagttggatgccatgtttgag
gctctggtttggccgcagctagataaactatcctatgagggcctctaccatcctacacca
ctgctgaaattactcatacaatgctccaaacatccaaggtatttttcactgctgggaaag
catcacaaggacagtgtagagttgtctcccttgccacaagtgatgaagcttctgctgaag
aaatctgtatcaagtcatgtgaccagctctatcatggagatggtttacaatcttctggag
gagattgatgaagaggaagatatcaaggtcattgaggtcaatcacatgatacacctatca
tctgctgaaaatgtgaaagagagtgatattggtatacgactgttattgccacatattcct
gatattcttctgtacatagaatcctttgtttccactttaaatacaaaacttcataagaaa
agcaagatctctggcaaagaactggacattctttcaagagtcagcagttttgtgaaagat
gaggaaattagtgccacacttgttgatctactactacctttcttgaatcccaaatactct
aaacctcagaaagtagaagaggatatactgacaagcattatgaatttattgaagcgtatc
tcagacaggatgcagttcttcaagcctataagtaaactgtttgccttgttgccacagcga
ccatccaggcttctacttacagaggcctttatggtaatatgtgaagttgaagaagatctt
aaacctcttggtgttattgtacaacagttgaattcttgggatcgtacacgcatggatgaa
cctgattacatgctgcgactggaaggttataggtcagccaatggtctgttgaagggtatg
gttgccatggatactaggatctgcctaacactgatatataattgctgtttctttatatct
acagtagaagatatgtctctgagggacagttccaccttgtgtatggtaaccatggtgaag
cagtttggtgaagttccatttgatgaggaggtgtataaaaaagttataatcttaaccttg
ttacaccaagtgaagacaggattcaggagcaagaaacagactgtgttccatgagtttgtg
actatattagctacaatggttgatatatttggtgaccaggctacatttactgatctcaag
cctctacgtgacaaagatattgaggcagacttttatgagaatataaaacatattcaggtt
tacaaaagatccagagctctacgacgccttatcaagtacctctactccaacaaagtgaat
catgacaccttgaccaacatcttcctaccaatggtgtccagtttccttatagacgacata
tataagaaacatcccacagttctagatgcagctatagatggtataggaactatatgtaaa
ctgttgccatggaaatcttacctcaaccagctcagacattatcttatcttgttgtcaagg
aaactggaaaaacagaagcttctagtcagggtaattgtgtcagtcttggacaacttccat
tttgacttgagaaattcaacactaaattggaaaaagacaccagtgccaaaagtagagagg
gaaccagaagagcaaaaagacctgaaaccagaagatgtagataaggataaagaaaaagaa
gaagtagatacagataagattgaggaggctgaggagcctgtggtagagattaatgaggaa
gaggagagcactgtggtagaagaggataaagggaagcaaatctgctcagaaccactggct
actaaaatacatggaactattttgaaaagtgttatacatcagcttcatagaattctggta
cagaaggcacggagtgatggggaacataaagtggtgaaatctaagtatgcagaagatgaa
gaaatccttagagtgcctatatcactagccatggtgaagttattacagaatcttccgaga
ggagctctcggcagatatcttcctggggttttgctgaaagtttgtaactttctcaagtcg
aggtcaattgagatcagaaacacgtcacgtgacacgctagtcaagatacagatgacgctt
ggtccacgattcttcccgtttatcctatcagagcttcgtggaacactgagacgtggatac
cagagacctgttgtgttacaagtattgaatgaggagatatttggagaagtatctgacgag
aaagatgtcgaagggattaaagcgaaggtgtttgaagctaggagcagtaaaagttacgag
tcttatgagtttattgcacgatatatcagtccagggtctttgatgaaattattagacccc
attaaaaagattttagattctaccagtagccacaagtctgccaggaaggtacaggaattg
ttgaaacgtgttacagctggtctccttgacaacaagactgttaccacggagacccttctt
atatttgttcatagtttaacaacacagaatttacctatgctgtcagaggaaaagccggca
ccaaaggttgaaaagacagagagtcggcccggtaaacagccacaaagttgtctcctcata
cctaaagctgctcctcgtggtggtctgaaacctaaagcccacaagaaaacaaatatacat
gtgcttgtagagttcggattacaacttctaagtatgtgtttaaagaagcagaaaattgta
aagtcagacagtactcacattcagatgttagatccactagtgccaatgttagctgactgt
ttattttccaaatatgttatggtgaatgcatacagtttgagagtattatgtaagattttg
aaattcccgatcccgtcattaaagaaacgcatgtcaaggatttccagtggaatgtttata
cttctccggaattatgcttctgctggtgctgctaggggagataatctggagctggtctcc
atgttgtttaaggctgtcacagtgttggtaagagaagtgaagtattacaaaattaaatct
gaccagcttcaagtgttgctgactttctgtgaggaagacattcatgatttcagcagacag
agtacagctttctctttgctcaagggaatattgtctcgtaaacttgatgtaccagagatc
cacgagctaatgaagaaagttgaagaaatgtcaatctctgccgaaacagcccatgtccaa
agggaatgtaggcaggccatgatgcagtatttattagattattcacatggtaagaagatt
aaggatcaccttcagttttacgtctccaatttaacctttgaactggagagtggtcgagaa
tcagctctagaaatgttagcctccttcttcacgtcatttccacagaatttgctagcagaa
tactcaggtttattctttgttcccatggcagcctgcttagccaatgacgagtctgtaaaa
tgcaggaagttaatcgccttagctataaagacgttattgggaaaacttgaccataatgct
agaactggcctgtttaccatagcgatgaaatggtttatggatgagaagttaagacacagg
agtttagctgcccaactatgtggactgtttgtagaagtagagagtgcacagtttgagtct
agattgtccgacactctacctgtgatagaacagcaacttgagcctggcaaatataaacag
gcggaagaagcatcactggaacatgaccaagatttaatgatatatcacacgttgaatacc
ttactgaaaatactgcgtgaatgtagtcaggttgtaacgagtcctaaatgggagtctagc
atgaatgttatatgggagcatgtagagtcatatcttagttatgctcacatctgggtacag
ctggctgctgctcaattgtttggactattgtttgctgcttggcaacctgaacagttggtt
actatggaaaccaaaacatctactcagtatataactacagacacatataagaagttgaga
actttagccaatgatttcttagcacagttacagtctgagcttctaaatgatgaacttgct
aaccaggtaattaagaacatgatattcttaatgaaatgtgcaaggcaaatggccaaggta
gagcaagagagaggggacatagaggaggacgaggagaaggagaaaggtctatctgtggtc
tggttggttaggaagatggtgagagaagcaaatcatgaggcaataaataacaacaagatg
ataattaagaggattcatgtattcaagtggctggcagctgtgtcagtggatatgggagat
aatatggaaacaaatgtattaaactcaatgttacctcccctgcagagagaactgaatgac
cagtccatgtatcaggatgctagtttgagaagtttagctcaagaagttgttgacttgttg
aagaagactgtcggggtagagaagttcacaggttcctatgccagcacacagaaagtgaga
gctgagagaagagatgagaggaaacgacagagagcatttcaggctgttgctaatccagag
ctgcatgcaaagagaaagttgaaaaagaatttgaacaagattgaggccaaaaagaggaaa
atagaacaatataaaccttctaagaaggcaaagaagaggaaataccaagaatttgctatc
actgactaa
DBGET
integrated database retrieval system
