Ruditapes philippinarum (Manila clam): 132725437
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Entry
132725437 CDS
T09557
Name
(RefSeq) cleavage stimulation factor subunit 1-like
KO
K14406
cleavage stimulation factor subunit 1
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132725437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132725437
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
132725437
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
CSTF1_dimer
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Ge1_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF4
Beta-prop_VPS8
Beta-prop_Nup120_160
Beta-prop_HPS5
Beta-prop_DCAF12
Beta-prop_NWD2_C
WDR54
VPS8_N
Motif
Other DBs
NCBI-GeneID:
132725437
NCBI-ProteinID:
XP_060566557
LinkDB
All DBs
Position
Unknown
AA seq
426 aa
AA seq
DB search
MEVKQRDLLYRLMISQLFYDGHQQLAVNLASMVKAHPACPPSDRLLKVLKLGLKAEEEVT
GEKTFKSEYITPGAGIDLEFETDVQTISPEAALYETCYVTAHKSACRVGVFHPSGQLIAT
GSEDTSIKILDVERMLAKSATPPEVIALETPQQAMENHPVIRTLYDHNGEITCLDFHPHH
QILASGSKDFSVRFFEYSKPSVKKAYKSIQEAAEVRTLSFHPGGDFILVGTNHPTLRLYD
VNTFQCFVGRNPNDQHTAAVTSAKYSPNANLYTTCAKDGHIKIWDAVSGLCINTFKNAHD
GEEVCSVQFTRNSKYILSSGKDSLVKLWELSTNRCLIVYTGAGTMGKQEHRTKACFNHTE
DYVLFPDEKTTSLCCWDSRNAERQRLLSLGHNGIVRCINHSPTGPAFVTCSDDNRARFWY
RKADSD
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgaaacagagagatctgctgtacaggcttatgataagccagttgttctatgat
ggacaccagcagttagcagtcaaccttgcttccatggtaaaggctcacccagcatgccca
ccatcagatagactgctcaaagttttaaaacttggactcaaagcagaagaagaggtgact
ggggaaaagacattcaagagtgagtacatcactcctggtgcaggaattgatttggagttt
gagacagatgttcagacaatatcaccagaagcagccttgtatgagacatgttatgttaca
gcacacaagagtgcctgcagagtaggagtcttccatcccagtggtcagttaattgctaca
ggctctgaagacacatcaataaagattctagatgtggaaagaatgttggccaagagtgca
acgccccctgaagtgattgcactggagacgccccaacaagccatggaaaatcacccagtc
atcagaacattatacgaccacaatggggaaattacttgtcttgactttcatccacaccat
caaattctggcgtccggcagcaaagattttagtgtcagattctttgaatattcaaaacca
tcagtgaaaaaggcatataaaagtatacaggaagcagcagaagtaaggacgttatcattt
catcctggaggggattttatcctggttggtaccaatcatcctacattacggctttacgat
gtgaacacatttcaatgttttgttggaagaaatcccaatgaccagcatacagctgctgtt
acatctgctaaatacagtcctaatgctaacttgtatacaacatgtgctaaagatggacac
atcaagatttgggacgctgtgtctggtttgtgtataaatacattcaagaatgctcacgat
ggagaggaagtgtgttcagtacagtttacaagaaattccaagtatattttatcaagtggg
aaagattcattagtgaagttatgggagttgtctactaacagatgtctgatagtgtatact
ggagcaggaactatgggaaaacaggagcacagaactaaagcttgtttcaatcatacagaa
gattatgtgttgttcccggatgagaagacaacaagtctgtgttgctgggactcgagaaat
gctgaacgtcaaagacttctttctcttggccataatgggattgttcgctgtataaatcat
tcaccgacagggcctgcatttgtcacatgcagtgatgataatcgtgcacgattctggtac
aggaaagctgattcagactga
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