Ruditapes philippinarum (Manila clam): 132726107
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Entry
132726107 CDS
T09557
Name
(RefSeq) WD repeat-containing protein 3-like
KO
K14556
U3 small nucleolar RNA-associated protein 12
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
132726107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rphi03009
]
132726107
Ribosome biogenesis [BR:
rphi03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
132726107
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Utp12
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_DCAF4
RMC1_N
PEP5_VPS11_N
WDR54
WD40_like
Beta-prop_RSE1_2nd
Beta-prop_EIPR1
Beta-prop_RIG_1st
Beta-prop_IP5PC_F
Beta-prop_VPS8
Utp21
PQQ
B-prop_COPA_B_2nd
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
132726107
NCBI-ProteinID:
XP_060567358
LinkDB
All DBs
Position
Unknown
AA seq
893 aa
AA seq
DB search
MGLTKQYLRYASAEVFGVIAGNKSNIVFLNTAGSQGKYCATGACEDVIVWDIRTGDKFFT
LKGERHEVTKLAGSPDKQHLAVGYNDGKVCVFNLQNGEKTITFSGHKSAVTALQYDHQGL
RLVSGGKDTDVIVWDIVNECGLYRMKGHKGAVTQAYFLKDRNILITSSKDTFVKFWDLDT
QHCFKTLVEHRSEVYDFVLLRNDTRLVTGSADSELRVWDITYTDQLNLIECKKMGSVMRS
GRDRLISMATDLQQTTLICHGNDRMLEVFKLPGENDLKKRLSKRLKKEKKKAGESIEESG
INVELKLEDEISKVAAVKMAAKIASADIMHSSNSTVKVLTLFNNNTFGYCAIDINDQKNP
ASGIGVLSQHGHQSDVRTISFSSDNTALMTASAESVKVWNRASLQCIRTMPCDYALCSMF
APGDRHIILGTKSGKLQIFDIGSGSLLEEVDAHGGSLWSICMTPDKRGIVSGGGDKKVFF
SLYFSKQLTLQHVRTLQMDEDVLCVKCSPDQRLLAVSLLDSTVKVFFMDTLKFFLSLYGH
KLPVLCMDISADSTLLVSGSADRNVKIWGLDFGDCHKSIFAHDDSIMCLQFIAKTHMFFT
GGKDRKIKQWDADNFEHITTLESHHAEVWCLSVSPSGNVLASGSHDKSLRLWQKTHEPLI
LQEEREMEREKEFEDSVGQGGEAVVPGETNKETGLAGKKSVETVKAAEKIMEAIELYKEE
KYKWSIYRLECQQSRTKKQEPEPNPLMIAFNVSTPEKYVLMVIKKVKSSELEEALLVLPF
QYVIGLLKLLEEFITNNWDIELMCRCLFFLLRVHHGQITACQELLPVVDRLRKITIEKLN
SLRDCVGFNLTGLQFLQRDIEHSAETVFFMDATDRFKEKKKKKKKKAILTIKT
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgggattaacaaaacaatatcttcgctatgcctctgctgaagtatttggggtaatagct
ggaaataagtcgaacattgttttcctgaatactgccgggagccagggtaaatactgtgca
acaggtgcttgtgaagatgtcatagtgtgggatatacgtactggagataagtttttcaca
ttaaaaggagagagacatgaggtaactaaattagcaggatcgccagacaaacagcatcta
gctgtaggctacaatgacgggaaagtttgtgtgtttaatttacagaatggggagaaaaca
atcacattcagtgggcataaatcagctgtgacagctttacagtatgatcaccagggactc
agacttgtgtctggtggaaaggatactgatgtaattgtttgggacatcgtgaatgagtgt
ggattatacagaatgaaggggcataaaggggcagtaactcaggcatattttctcaaagac
agaaatattcttattaccagttctaaagacacatttgtgaagttttgggatctagatact
caacattgttttaagacattggtagagcacagaagtgaggtgtatgattttgttttgttg
agaaatgatacaagattagtgacaggatctgctgacagtgaacttagagtatgggatatc
acatacactgaccaactaaatctgatagaatgtaagaaaatgggatcagtaatgaggtct
ggtagagatagactaatctccatggcaaccgatctgcagcagacgacactaatatgtcac
ggaaatgatagaatgttggaagtttttaagctgcctggtgaaaatgatttaaagaaaaga
ctttcaaaacgacttaaaaaggaaaagaaaaaggctggggaaagcattgaggagagcggt
ataaatgttgagttaaagctggaggatgagataagtaaagtggcagcagtaaaaatggcg
gcaaaaatagcatcagctgatatcatgcatagttctaacagtacagtaaaggtgttgaca
ctgtttaacaacaatacatttggctactgtgcaatagatatcaatgaccagaagaatccg
gcatcaggtataggtgtgttaagtcaacatggacaccagagtgacgttagaactatcagc
tttagttctgacaatacggcattgatgacggcaagtgccgagtctgtgaaagtctggaac
agggcttcattacagtgtattagaactatgccatgtgattatgccttatgttccatgttt
gctcctggtgacaggcatataatccttggtacaaagagtgggaaactacaaatatttgac
attggtagtggatcattgctggaagaagtggatgctcacggaggctcactctggtctata
tgtatgacaccagataagagaggtatagtgtctggtgggggggataaaaaagtgtttttt
tctctatatttcagtaaacagttaacattacaacatgtgcggacactacagatggatgaa
gatgtactgtgtgtaaaatgtagtcccgatcagagattgctggcagtctccctccttgat
agcactgttaaagttttctttatggatacattaaagtttttcctgtccctctatggtcat
aaattaccagtgttatgtatggacatctcagctgacagtactctgctggtgtctggctcg
gctgacagaaatgtgaaaatatggggtctagactttggtgactgccataaatctatcttt
gctcatgatgacagtataatgtgcctacagttcattgctaaaactcatatgttcttcact
ggtggtaaagataggaaaataaaacagtgggatgctgataattttgaacatataactact
ttagagagtcatcatgcagaggtttggtgtttaagtgtgagccccagtggtaatgtgcta
gccagtggttcacatgacaagtccctcagactctggcagaaaacacatgaaccgttaatt
ctacaggaggaaagagaaatggagcgtgagaaggagtttgaagattctgttggtcagggt
ggtgaagcagtggttccaggggaaacaaataaagagacaggtctagcagggaagaagtca
gtagagactgtaaaagctgctgagaaaataatggaagctatagaattatacaaagaggag
aaatataaatggtctatttatagacttgagtgccagcaatcaaggacaaagaaacaagaa
ccagagcccaacccacttatgattgcattcaatgtaagcacaccagaaaaatatgttctt
atggtcatcaaaaaggtgaagtctagtgaattagaagaagcactgctagtactaccattc
cagtatgtgataggtttactgaagttgctggaggaatttataactaacaactgggatata
gagctcatgtgtagatgtcttttctttttacttagagtacatcatggtcaaataacagct
tgtcaggagttattaccagtagtagatagattacgcaagatcacaatagaaaaacttaac
tctcttagggactgtgtaggatttaatcttactgggcttcaatttctacagcgggatata
gaacattcagctgaaactgtgttcttcatggatgctacagacagatttaaagaaaagaag
aagaaaaagaagaaaaaagccattttgactattaaaacttga
DBGET
integrated database retrieval system
