Ruditapes philippinarum (Manila clam): 132726287
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Entry
132726287 CDS
T09557
Name
(RefSeq) E3 SUMO-protein ligase ZBED1-like
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rphi03000
]
132726287
04121 Ubiquitin system [BR:
rphi04121
]
132726287
Transcription factors [BR:
rphi03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
132726287
Ubiquitin system [BR:
rphi04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
132726287
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
ZBED1_RNase-like_helical
ZBED1_RNase-like
zf-BED
DUF8247
Sterile
Motif
Other DBs
NCBI-GeneID:
132726287
NCBI-ProteinID:
XP_060567575
LinkDB
All DBs
Position
Unknown
AA seq
638 aa
AA seq
DB search
MASDSQHAIENLSQENLTKNMEHEDQVLFNYPTRSIVWKYFGFTKKGLGPAIKANLNMNT
AICKLCKKSYANKGNTTNLLFHIDHDHKRTASGDENNNIKKAPTQPTIQALIANPGRLTQ
KSRTNLDDALLKLIVGKALPISLVKNPHFIEFTKLLDPRCSHNTRRLDKSYSAVTAHFID
DKWNLKSAVLQTKKVEGSHTSEKIAEGLKEVQTEWKLPTSLTLVTDNAANERKAAELLGW
TRFGCYGHRINLVVKHALEVTELNKILGKSRRLVTFFHQSTSATDALIEKQKLVFSNTPG
LIGHKLITDVPTRWNSTLAMLGRLAEQLPAIMSIIFDTNCLNKTAISTVKTYCLTSEEHS
VVQELISVLKSFETATTILCAESSPTMHKVLPCMVKIKKKLEDVESNPLTSPVVKKVILK
MKEELLKRTQVEDVPLLAALLNPDTKNLNFLTAEEQVSARQLLMDTALNLKVDNAALPNV
KVKQEEAVSANLPDLPVLPDIDLESDQNVKFECEKEGPSEKKMKLTDMDEWFDDVCFIGE
SQQPLQNLIELEVHRYFSHNQPQSSKQQTLLQWWQANHYFYPQLATLAKKYLAVPASSVP
SERVFSLAGIVVDKKRSRLKPDLVDTLIFMKMNIETYW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggactcgcagcatgcaatagaaaacttatcgcaagaaaacctaacaaaaaat
atggaacatgaggaccaggtcttgttcaattacccaacgcgatccattgtgtggaagtat
tttggattcacgaaaaaggggcttggaccagcaataaaagcgaacttgaacatgaacaca
gccatctgtaaactttgcaaaaaatcgtacgctaataaaggaaatacaacaaatttgcta
ttccatattgatcacgaccataaaaggactgcttctggggatgaaaataataacattaaa
aaagcacccacccagccaacaattcaggctctgattgccaaccctggtcgtcttacacag
aagagtagaaccaacttagacgatgcattattaaagttaattgtaggaaaagcccttcca
atcagccttgtgaaaaatccacacttcattgaatttaccaaattactagacccaagatgt
agccataacacacgacggctggacaagagctattcagctgtaacagcacactttattgat
gataagtggaatctaaaatcagccgtgctgcagactaagaaggtggaaggttcacacact
tcagagaaaatagctgaaggtttaaaagaagtacagacggagtggaaactaccaacatca
cttacattagtaactgataatgctgctaacgaacgaaaggctgctgaactccttggatgg
acacgattcgggtgctacggtcaccgtattaacttagtggtcaaacatgctcttgaggta
actgagttgaacaagattttgggtaaatcaagacgacttgtaacattttttcatcaatca
acaagcgccactgatgctttaattgaaaaacaaaagttagtgttttcaaacacaccaggt
ttgattggacataaactgataactgacgttcctacacgttggaatagtacactggcaatg
cttggcagattggcagaacaacttcctgctataatgagtattatctttgatacaaattgt
ctaaacaaaactgcaataagcactgtaaaaacctactgtctaacatctgaagaacattct
gtggtgcaggaactcatttctgttttaaaatcctttgaaaccgcaacaacaattttgtgc
gcagaatctagtcctactatgcataaagtgcttccttgtatggtaaaaatcaaaaagaag
ttagaagatgttgagagtaatcccttaacatctcctgttgttaagaaagttattttgaaa
atgaaagaggaactgttaaaaaggactcaggtggaggatgtacccctcctggcagctcta
ttaaatccagataccaagaatctcaatttcttgacagcggaggaacaagtgtctgcccgt
cagttgctaatggacactgcgttaaatttaaaggttgataatgctgcccttccaaatgtt
aaagtaaaacaagaagaggctgttagtgccaatttacctgacttaccagtgttacctgac
atagacctagagtctgaccagaatgttaaatttgaatgtgaaaaggagggtcctagtgaa
aagaaaatgaaattaactgatatggatgagtggttcgacgatgtatgcttcataggagag
tcgcaacaaccccttcagaacttaatagagttggaggttcatagatatttttcacacaat
caaccacagagttcaaagcagcagacgcttctgcagtggtggcaagctaatcattatttc
tatccacaacttgcaactttagccaaaaagtacttggcagttccagcatcatcagtacca
agtgagagggtgttcagcttagctggtattgttgttgacaagaaacgatctagattaaag
ccagatttggttgatacgttaatttttatgaagatgaacatagaaacatactggtga
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