Ruditapes philippinarum (Manila clam): 132726334
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Entry
132726334 CDS
T09557
Name
(RefSeq) retinoblastoma-like protein 1 isoform X1
KO
K04681
retinoblastoma-like protein 1
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
132726334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rphi03000
]
132726334
Transcription factors [BR:
rphi03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
132726334
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RB_A
RB_B
DUF3452
Rb_C
Motif
Other DBs
NCBI-GeneID:
132726334
NCBI-ProteinID:
XP_060567628
LinkDB
All DBs
Position
Unknown
AA seq
1097 aa
AA seq
DB search
MVLSEDGEDKLEEKYDELCLDLNMDRKTKEEAWKNYEKIKKNYTLEGDQIHWLSCALYES
CRRTVVPTVGRGTVEGNCVSLTRLLRSSKFSLIQFFNKMKKWSDMASLSQEFRDKVERLE
RNFAVSTVIFKKFEPIFLDIFKSPADEAPRQPRSRKQRKLPCSLVEVFNFCWTMFVQVKG
NFPAISDDLVNSYHLLLCNIDWFYTNALLGGRKDLLNPNFSGLPEGFHARDWKPPSEPPC
IMKHLCDKHEGLEIEAKVIKEHWWKPHLKKLFDKKVLKGKPDTLSSVLEIGNFEANNDAI
NEAYDEFPLAYSRKAVNNAYEEYVLSVGDFDERIFLDDDADEEIGTPAKSREDVTGELKE
RMQQRTSLQQHVDQTRSLAPSTPLTGRRYLKEKDPTITPVSTATQSVSRLQHLLSGRKTA
PSDTLQEILIELGGEALMDTITQRVKDMGEIFCNNYVQASESHPGSQLDFAKRRLQLGES
LYFKTLEEILTSERKRAENCKDHKSNVTGLLEHDLFHRSLFACCLEIIIFSYNSQRMFPW
IVDIFDLSPYHFYKVIEIIVREEEGLSRDVVKHLNHIEECILESLAWRGDSPVWEAIKSQ
NSDVPQSAEVSLPANSDPSKLSLRRIVLDKKTQNTKDPLLSPTGPSAADRFSSPSPGSAK
RRLFSGESSNTTTVAQLKPGTITSLAAQLSSIVSDGKPVSTPQKQTQHLVAFQQVITQDG
RQVLIPVQTQVLTPQVTTSRVQVSEESTTTVNTSTTAAATQTSTQQGTHKSFKGGSLGLF
FRKVYHLAHVRLRDLCDRLDIDDEDLHRKIWTCLEYVIVHHTELLKDRHLDQIIMCSVYV
ISKVTDRSQSFQNIMKCYRLQPQAQSHVYRSVLLNSRYRHTSGSSDGSHAEASGTSSPVN
GEKEENKEKKTMPMRSSSTLPVPHPSSHPPTPTRMVGTGSNFEFGEERGDLIQFYNQVFI
TQMRAFALRFSASQNGDAPPLSPLPPTRCHTTSPRRVSSKHSVYISPHKSWGAATKLPDR
RMLYCFNRSPSKSLKAINNMIRLKSENRLEFSGKRTLQIDSNDEPAVPPKRISLFHKRLQ
DVTSDRQEQASKVVIVK
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggttctttcagaagacggagaggacaaactagaggaaaagtatgacgagttatgtctt
gatcttaacatggaccggaaaacaaaggaagaggcatggaaaaattacgaaaaaatcaag
aaaaactacacattagagggggaccagattcattggttatcatgtgcactttacgagtcg
tgcagaagaactgtcgtaccaactgtagggaggggaactgttgaaggcaactgcgtctcc
ttgacaagattacttagatcctcaaaatttagtttgatacagtttttcaacaaaatgaaa
aagtggtcagatatggcaagtctgtcccaagagtttagagacaaagtagaaagactggaa
cgaaactttgccgtttcaactgtgatatttaagaagtttgagccgatttttctagacatt
ttcaaaagtcctgctgatgaggcgccgcggcaaccaaggagtaggaaacagaggaaatta
ccatgttcattagttgaggtgtttaatttttgctggacaatgtttgtacaagtgaaaggt
aactttcctgcaatcagcgacgatttggtaaactcgtaccatttattattgtgcaatata
gactggttttatacaaatgccctccttggaggaagaaaagatctcttgaatccaaatttc
tcagggttaccagaagggttccatgcaagggactggaagcccccatctgagcccccttgt
ataatgaagcatttatgtgataaacacgaaggtctggagatagaggccaaagtgataaaa
gaacactggtggaaaccacatcttaaaaaattatttgataaaaaggttttaaaaggcaag
cctgacacactatcatctgtactagaaatagggaactttgaggcaaacaatgatgcaatt
aatgaagcgtatgacgaatttccacttgcatacagcagaaaagctgtaaacaatgcctat
gaggagtatgtgctcagtgttggcgattttgacgagcgtattttcctggatgatgatgca
gatgaagagatcggaactcccgccaagtctagggaagacgttacgggagaattgaaggag
agaatgcaacagcgaacaagtttacagcaacatgttgatcagacacgcagcctggctcca
tcaacacctctgacaggcagacggtaccttaaagagaaggatccaacaattacaccggtg
tccacggcaactcaaagtgtgagcagattgcaacatttactgtctggaagaaaaacagcg
ccaagtgatactttacaagaaatacttatagagctaggtggtgaggcgctgatggacaca
attacacaaagggtcaaagacatgggagaaatcttctgtaataattatgtccaggcatca
gagagccatccaggaagccagcttgacttcgcaaaacggcgacttcagctcggtgaaagc
ctatacttcaaaacattagaggaaattctcaccagtgagaggaaaagagcagaaaattgc
aaagatcataaaagcaatgtaacaggattattggagcacgacttgtttcacagatcattg
tttgcctgttgtctggagatcattatcttctcatacaactctcagaggatgtttccatgg
attgtagatatatttgatttaagtccgtaccatttctacaaggtgatagagattattgta
agagaagaggaaggcttgtcacgggacgtggtcaaacatcttaatcatatagaggaatgt
atcttggagagcttggcatggagaggtgactcaccagtgtgggaggcaataaaatcacag
aactcagatgtcccacagtctgctgaggtatccttacctgctaattcagacccgtcaaag
ttaagtttacggcgaattgttctagacaagaaaacacagaatacaaaagatcctttgtta
tcaccaacgggaccttcagctgcagacagatttagctccccttctcctggtagtgctaaa
cgtcgtttgttttctggcgagtcgtcaaacacaacaacagtggctcagttgaagccggga
accataacttctctagcggctcagcttagctcgatagtgtcagacgggaaaccagtttct
acgccacaaaaacaaacacagcatcttgtagcttttcagcaagtgatcacacaagatgga
agacaggtgctgatccctgttcaaacccaggtgttgaccccgcaggtgaccactagtagg
gttcaggtgtcagaggagagcacaacaactgtgaatacttcaaccaccgcagctgctaca
caaacttcaacacaacagggcacacataaatctttcaagggtggatctcttggtctcttc
tttagaaaggtttatcatttggcgcatgtaaggttacgtgatttgtgtgatagactagac
attgatgatgaagaccttcacagaaagatctggacgtgtctggagtatgttatagttcat
cacacggaattattgaaggaccgtcatcttgaccagatcatcatgtgttccgtttacgtg
atctctaaggttaccgacagatctcagtctttccaaaacataatgaagtgctatagatta
caacctcaagcgcaaagtcatgtatatagaagtgttttactgaacagtagatatagacat
acttccggaagtagtgatggcagccatgctgaggctagcggtacctcttcacctgtaaac
ggggaaaaagaggaaaacaaggaaaaaaagacaatgccaatgcgttcgtcaagtaccctt
cctgtaccacatcctagtagtcatcccccgacccctaccaggatggtcggtacaggatca
aactttgagtttggagaggagaggggtgatctcatacagttttataatcaggtttttatt
acacaaatgcgagcatttgccttaagattttcagcaagtcaaaatggggatgccccgcct
ttgtctcctcttccaccaacaagatgccacacaacttctccacgtcgagtttccagtaaa
cactctgtgtatatctcacctcacaagtcctggggcgctgcaactaaattaccagacagg
agaatgttgtattgctttaacaggagcccctctaagagtctaaaggccataaataacatg
attcggttaaagagtgaaaatcgacttgaattttcggggaaacgtacattacaaatagac
tctaatgatgaacctgccgttcctccgaagagaattagcttgtttcacaaacgactgcag
gatgtaacgtcagatagacaggaacaggcatcaaaggtcgtcattgtgaaatag
DBGET
integrated database retrieval system
