Ruditapes philippinarum (Manila clam): 132726687
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Entry
132726687 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 12-like protein
KO
K15162
mediator of RNA polymerase II transcription subunit 12
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphi03021
]
132726687
Transcription machinery [BR:
rphi03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
132726687
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med12-LCEWAV
Med12
KDM5_C-hel
Motif
Other DBs
NCBI-GeneID:
132726687
NCBI-ProteinID:
XP_060568018
LinkDB
All DBs
Position
Unknown
AA seq
1336 aa
AA seq
DB search
MAAFPSQDKRPLKKARLGPPDVYPQDPKQKEDELTSTSVKLGFSNLPHFNDEYGSGKNAN
ISQEKFGAFFSAVMTKKIELNTWSDSSKKKPQIMKDNFWPVTTTKKPLVENWFKDLASGS
KPLAHLSKRVPSFFYSKKEEIFTNLCEFNIPMIKAVWFIKMTAAHYLAMQENKPKKRQTV
DQSLEWTIGLTKFMKEQLNKVQEHYHGSTTGPVMSFLTATQAPSQVDLDLALKQWHYCSR
LARHMYDEGLLDRHEFLSWIVEIVEKTKQTDDTILKLVLKELLQYLDEVTLSAQLSRRLA
YGAARRISQMCNDSGCTSPRTQSPMLNASNNNNNNNQLVSQNPLAAVFAEYNNCPQHRGI
ILSLSACLQVITMTSPSAMIWNNLSEGRSSSPYCGSPLDILPCSPSCLPMPPSEQNNQIR
SQIRNMEQQIRLRSRAAEVRWSSDKCQQSTTGYTMGKVLNVLDMLDRHNFDKVESNNCLD
SLYNKIFTVTQNKDGNEECVSLFLPLVSETQIKLLIDWXVSTKRKGAHRAVVVAKLLEKR
QSDIRAEKYGDSDVPDDKDSAGSDMMIPASVPVFQSLLLNFLDTKAPVLDDTANSSEDSQ
QAFANLIHLFSELIRHEVFSHDAYMCTLISRGDLMSAPAVASMVADSVDLLSMKSEVESI
KHEHQDDIKVDMDIHTMDTDFGSFFDVKDEPRLSPTAPASVKSIKSEKEQPIASVSKPEP
PMMAELKGPSRHQQYATHFPLPQDELSSHECNQRLVVLFGVGKARDAARHILKKVGKEIL
RLYSRKSCIDMSSGDLGKPKKKKDKDEPSSVSVVGNLEVLFGKFHKLSYYDQHVVTWQCT
MAVHEQINCFTSGTSTYLPQVENISYLFDLMEHSMAVNTLLEFSVQLLKDLSIVESQLSA
SNSNLSGIYTTSLCLCIVAIFRKYHSFLLVSEDLTFQAFEGLIGVVKHVCNPADCSSAER
CILAYLYDVYTSCSYLKNKFQEMFSNAYSKIRVTLYADIKPSASNLMWDPAFMGSFLENA
KTIPIEQALIDQLNKQGASRYSFVVNTMLNICKFLLSSDRLNEISVLCAELTAKCNSLSA
EWLGVLKALCCSSNHNCGYIDVLTQIDVSDLSFHDNLAVFTSILIARHCFSLQDFIGYVA
LPSLVNPAFAGGDQDAEPGARLTCHLLLRLFKVSHASNNPYPGGNKRGTYVKASSDRHLL
AAVHNNIDVGAVLAVLKAMLALADSCRDEVKTKTSSKKDSKGGDDIISTILSSLDVDISM
DMMLGTSGSMENAGLSEFSKHSLREMCSQDWVREKFLRDPEGLFNSEMLLDTMLSSEQTQ
QLVRMICYPSSAASKM
NT seq
4010 nt
NT seq
+upstream
nt +downstream
nt
atggccgcttttccaagtcaggataagcggcctttaaaaaaggctagattgggaccgcca
gatgtttatccacaggacccaaagcaaaaagaggatgaactcacgtcaaccagtgttaag
cttggattcagtaatttgccacacttcaatgatgaatatggatccgggaagaatgcgaac
atcagtcaagagaagtttggagcattcttcagtgcggtgatgactaagaagatagaattg
aacacatggagtgacagtagcaaaaagaagccccagattatgaaagataatttctggccg
gttacaacaacaaagaaacctctcgtagaaaactggtttaaagatttggcctcaggatct
aagcctctagcacacctgagcaaacgagtgccgtcctttttctacagtaagaaagaggaa
atattcaccaacctctgcgagtttaacattccgatgataaaagcagtgtggtttatcaag
atgacggcggcccactaccttgccatgcaggaaaataagccgaagaaaagacaaacagtt
gatcagtcactagaatggactataggtcttacaaagtttatgaaggaacagttaaacaag
gttcaggagcattaccatggcagcactactggtccggtgatgagttttctgaccgccact
caggcaccatcacaggtcgacctggatctagcgctcaaacagtggcattactgttcacgg
ctggcaagacatatgtatgatgagggattactggacagacatgagtttttgtcatggatt
gtggagatagtagagaagacaaaacagactgatgatactatactgaaactggtgctgaaa
gaattgttacagtatcttgatgaggtgacattatcagcacagttatcgagacgtctagct
tacggtgcggcacgtagaatcagtcagatgtgtaatgattcaggttgtacctcgcccagg
acacagtcgccgatgttaaacgcaagtaacaataataacaataacaatcagctggtatcc
cagaatcctctggctgcagtgtttgcagagtacaacaattgtccacaacatagagggatt
atactaagtttaagtgcatgtctccaggttataacaatgacaagcccgtctgctatgatc
tggaacaacttaagtgaaggtaggagtagttccccttactgcggatcaccactggatatt
ctcccttgttcaccgtcttgtttacctatgccaccaagtgaacaaaataatcagatacgt
tcacagattaggaatatggagcagcagatacggttacgtagtagggcagcagaagttaga
tggtcctccgataaatgtcaacagtctacgactggttatactatgggtaaagttttaaat
gttctggacatgttagacagacacaactttgataaagtagaaagtaacaattgtctagac
tcactgtataacaaaatcttcaccgtcacacagaacaaagatggaaatgaggaatgtgtt
tctttatttttaccattggtcagtgagacccaaatcaagctgcttatagactggngtgtg
agtacaaagagaaaaggtgctcatagagctgttgtggttgctaagttactagagaaaagg
caaagtgacattagggcagagaaatatggggattcggatgtacctgatgataaagattct
gctggtagtgatatgatgataccagccagtgttcctgtcttccagtccttacttcttaac
ttcctagatactaaagctcctgttctagacgatacagctaactcgagtgaggacagccag
caagcgtttgctaacttgatccacctgttctcagagttaatacgtcatgaagtattctca
cacgatgcgtacatgtgcacgttgatctcgcgtggtgatctcatgtcagcgccagctgta
gcttccatggtggccgacagtgtcgacttactcagtatgaagagtgaagtggagagtatt
aaacatgaacatcaagatgatataaaggtggacatggacatacatacaatggatacagac
tttggtagcttctttgacgtgaaagatgaaccaagacttagtcccactgcacctgcttcc
gttaaatcaattaagtcagagaaagagcagcctatagcaagtgttagtaagcccgagccg
ccgatgatggcggaacttaaaggtccatccagacatcagcagtacgctacccacttccct
ctacctcaagacgagttgtcaagtcacgaatgtaatcaaaggctagtggttctgtttggt
gtcggaaaagctcgggacgctgcgcgccacatcttaaaaaaggtcgggaaagagatccta
cgattgtacagtcgtaaaagctgtatagacatgagtagcggtgatctcggtaaaccgaag
aaaaagaaagataaagacgaaccaagttcagtttcagttgtcggtaacctagaagtgctg
tttggaaagtttcataagttatcgtattacgatcaacatgtggtcacgtggcagtgtacc
atggccgttcacgaacagatcaattgttttacatcgggaacgtcgacgtatttaccgcag
gtggagaatatatcgtacttgtttgatctgatggaacattcaatggctgttaacactctc
ctagaattttccgtacagcttctgaaagatttgagtatagtggaaagccagctgtctgcc
agtaactctaacttatctggcatctacacaacatcactgtgtctgtgtattgtagctatc
ttcaggaaatatcattccttcctgctagtctccgaagatctcacatttcaggcatttgaa
ggtctgattggtgtggtgaagcatgtatgtaacccagccgactgttcatcagcagagaga
tgtatcctggcatacctgtatgatgtctacacgtcctgtagctatctcaagaacaagttc
caagagatgtttagtaatgcctactctaagatacgagtaacattatatgctgatatcaag
ccatctgcctctaacctcatgtgggatccagcattcatggggagcttcctggaaaatgcc
aagacaatccctatagaacaggcattgatagatcagctgaataaacaaggggctagtaga
tacagttttgttgtgaacacaatgctgaatatctgtaaatttctactctcatctgacagg
ttgaatgagataagtgtgttatgtgcagagctgacagctaaatgtaattctctgagtgct
gaatggctgggtgttctcaaagcattatgctgctcgtccaatcataattgtggttacatt
gatgtcctgacacagatagatgtgagcgatttatccttccatgacaatctagccgtgttc
acgtccatattgattgctagacattgtttctctctacaagattttataggatatgtggct
ttaccatctcttgttaatcctgcgtttgctggaggggaccaggatgctgagccgggcgcc
agactaacgtgtcacttgttactacgtctctttaaagtttctcacgccagcaacaatcct
tacccaggtggtaataagagagggacgtatgttaaagcatcgtcggaccgacatttgcta
gcggctgttcataataacatagatgtgggggccgtcctggcagtcttaaaagccatgtta
gctttagctgactcgtgtcgggatgaagtgaaaacaaagacgtcaagtaagaaggacagt
aaaggaggagatgatatcataagtacaatattgagtagtttagatgttgatatcagcatg
gatatgatgcttggtacatcggggagtatggagaatgccggactaagtgaattctcgaaa
cattctttacgagagatgtgtagtcaggactgggtgcgagaaaaattcttacgagatccc
gagggtctgtttaactcggagatgttgctagatacaatgcttagttcggaacagactcag
cagttggtaagaatgatatgttacccgtctagtgccgccagcaagatgga
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