Ruditapes philippinarum (Manila clam): 132726705
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Entry
132726705 CDS
T09557
Name
(RefSeq) E3 SUMO-protein ligase ZBED1-like
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rphi03000
]
132726705
04121 Ubiquitin system [BR:
rphi04121
]
132726705
Transcription factors [BR:
rphi03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
132726705
Ubiquitin system [BR:
rphi04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
132726705
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
ZBED1_RNase-like_helical
ZBED1_RNase-like
zf-BED
DBD_Tnp_Hermes
zf-C2H2-SPIN-DOC
DUF659
DUF8247
FAM200-ZBED5_RNase-like
Motif
Other DBs
NCBI-GeneID:
132726705
NCBI-ProteinID:
XP_060568045
LinkDB
All DBs
Position
Unknown
AA seq
621 aa
AA seq
DB search
MEENTPEMTTSDVWAEQRVLVKFCMELGKTPGETMEFINSNTVCMKCDMVIKCSGGGTSN
LSAHIRRHHPSLLSSAKSLKSSSKTTTTDVHVDQKQSETVSLPTIPKLFASKYASSSDRS
KLITNKIARFLVKDLRPYSMVESPEFKDLISCLDPRYTVPGRKVFSERIIPEMYESAKEN
VKLNLKNAEQVSLTTDGWTSCATESYMTVTSSHITDSWELKNFVLQTRALPESHTAEHVT
AVLNAAVEEWALPTGHGKPTLVTDNASNMVKAGELFGSLHLGCYAHTLNIAVQKCLSVKR
ASHLLAKIRRIVAFFHRSNTANNILQVKAEALGLPQHKLIIDVSTRWNSAYDMVSRFLEM
QVAVFATLRSKDVGKVSDVSISDEELLLAEEMIMFLKPLKDITVMLCSENNPTVSVIMPL
QHQIVNFILTGTDTECPAVTEMKSLVKKSLETRYKGNENLLTEIDEPELPSLPENTERDS
KPTEQESTQGPPSKKIKTETKSISTSMKSAKSSVFGEIFGDVYICAVEPPKTPLLLAQAE
VQQYKECPPVPLDVNPLQWWKDNEHKFPLLARVVKKYLCIPATSVPSERVFSTAGDILCA
QRSRLKSKHVDKLIFLKKDLL
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaacacgccagaaatgacgacgtcggacgtttgggcggagcagcgtgtgcta
gtaaaattctgcatggagcttggaaaaacgcctggagagacgatggaatttattaattca
aacaccgtatgtatgaagtgtgatatggtcataaaatgttcaggaggtgggacgtccaat
ttatcagctcacattcgccgacatcatccgtcattattgtcgtctgctaaatcattaaaa
tcaagttcaaaaactaccaccactgatgttcatgtggaccagaaacaaagtgagactgtt
tctttacctacaataccaaagctatttgcgtcaaagtatgccagtagttcagatcgatct
aaactaataacaaataaaattgcaagatttttggtgaaagatctccgtccatacagtatg
gtagaaagtcccgagtttaaagacttgatcagttgccttgacccaagatatactgtccca
ggcaggaaggtgttttcagaaagaatcatacccgagatgtatgaatctgccaaggaaaat
gtgaaacttaatctgaagaatgcagaacaggtttcactgacgactgatggatggacgtcc
tgtgctactgaatcctatatgacagttacatcaagccatatcactgatagttgggagttg
aagaactttgtgttgcagaccagggcactcccagagagtcatacagcagagcatgttaca
gcagtattaaatgcagcagttgaggaatgggctctaccaacagggcatggtaagccgact
ctagtaaccgataatgcaagtaacatggtgaaagctggagagttgtttggttcacttcac
cttggatgttatgctcacacattgaacatagctgtgcagaaatgcttatcagtaaagaga
gctagtcacctgcttgccaagatccgtcgaatagtagctttttttcacagaagcaacact
gcaaataatatccttcaagtaaaggctgaggctctaggtcttccgcagcataaattgatc
attgatgttagcacaaggtggaacagtgcatatgatatggtgtctagatttctcgagatg
caggtggctgtgtttgcgacccttaggtcaaaagatgttggcaaagtgagtgatgtctcc
atttctgatgaagaactgcttctagcagaggagatgatcatgtttctaaagcccttaaag
gatatcacagtgatgctctgctcagaaaacaacccaacagtctctgtaataatgccctta
caacatcagattgtaaacttcatcttgacaggcacagatactgaatgccctgcagtgaca
gagatgaagtccttggttaagaaaagtcttgaaactcgatacaaaggaaatgagaacctc
ctaactgaaattgatgagccagaattaccaagtttgcctgaaaatacagagagagatagt
aaaccaactgaacaagaatccacccaaggcccaccttcaaagaagatcaaaactgaaaca
aaatcaatatcaacaagcatgaaaagtgcaaaatcatcagtatttggagaaatctttggt
gatgtctatatttgtgcagttgagccacccaagacacctcttcttcttgctcaggctgaa
gtacagcagtacaaagaatgtccaccagttcccttggatgtgaaccctttgcagtggtgg
aaagataatgagcacaagttccctcttcttgctcgggttgttaagaagtacctgtgcatt
ccagccactagtgttccatctgaacgagtcttctctactgctggagatattctttgtgcc
cagaggtcacgtcttaaatcaaaacacgttgacaagttgattttcctaaagaaggacttg
ctataa
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