Ruditapes philippinarum (Manila clam): 132726720
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Entry
132726720 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage stimulation factor subunit 3-like
KO
K14408
cleavage stimulation factor subunit 3
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132726720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132726720
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
132726720
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
Motif
Other DBs
NCBI-GeneID:
132726720
NCBI-ProteinID:
XP_060568059
LinkDB
All DBs
Position
Unknown
AA seq
465 aa
AA seq
DB search
VELWKKYIAWEKGNPLRTEDQALITKRVMFAYEQCLLCLAYHPDVWIEAANYLEQSSKIL
TEKGDQNAGKMFADEAAALFERAITTTMKGNMLIYFTYADFEESRMKYEKVHSIYKRCVA
VESLDPSLVYIQYMKFARRAEGIKSARQVFKLAREDKRSTYHVFVAAALMEYYCSKEKTV
ALKIFELGLKKFGDVTDYIRAYVDFMSHLNEDNNTRVLFERVLSSGQIPPEKSIDIWSRF
LAFESEVGDLASILKVEKRRSQAIEKIQEFEGKDTALLIDRYKYADLFPCSQSELKALGY
HDLIRKQVVELPTSKVTKIVMEEDENMKRPEYPKPDTQQWLPFKPKINVPIDAHVVPGGV
FPPPAAASALMMLMPPPECFHGPFVIIDKFIEHFKKLEIPDIPMLENGVDTPVKMDPGTL
LSLEYASGRKRRITENEASDDEDMPSGPAPPVNDIYRSRQQKRSK
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
gttgagctatggaagaaatatattgcctgggaaaagggtaatcctctaaggactgaggat
caagcccttataacaaaaagagttatgttcgcatatgagcagtgtctactttgtttggct
tatcatcccgatgtatggatagaggcagctaactacctggaacaatctagtaaaatactg
acagagaaaggggatcagaatgctggtaaaatgtttgctgacgaggcagcagccttgttt
gagagagctatcacaactacaatgaagggaaacatgctgatatactttacatatgctgat
tttgaagagagtcgtatgaaatacgagaaggttcacagtatttataagcgatgtgtagca
gtagaatctctagatccatcactggtttacatacagtacatgaagtttgcaagacgagct
gaagggataaagtcagctagacaagtgttcaaattagcaagagaagataaacgctccacc
tatcatgtgttcgttgcagctgccctaatggaatactactgcagtaaagaaaaaactgta
gctttaaagatatttgagcttggtttgaagaaatttggagacgtaacagattatatccgg
gcatatgtggacttcatgtcacacttaaatgaggataacaataccagggtactgtttgaa
agagttttatcttctggccagatacctcctgaaaagtctatagatatatggagtcggttt
cttgcctttgaatcagaggttggtgatctagccagtatacttaaagttgaaaaaagaaga
tctcaggcaattgaaaagatacaagaatttgagggcaaagacacagcgttgttaattgac
aggtataaatatgctgatctatttccatgcagtcagtcagagttaaaggcattaggatat
catgatctaataaggaagcaggttgttgaactaccaacaagtaaagttaccaaaattgtc
atggaagaagatgaaaatatgaaacgtccagaataccctaaaccagatacacaacaatgg
ctgccatttaaaccaaaaatcaatgttcctattgatgctcatgtagtacccggtggtgta
tttcctcctccagctgcagcatctgccttaatgatgttgatgccacctcctgaatgtttt
catggtccatttgttatcatagacaagtttatagagcatttcaagaaattagaaattcct
gatattcctatgttagagaatggagtagacacaccagttaagatggatccaggtactcta
ctttctctagagtatgcatccggtcgtaaacgaagaattaccgagaacgaggcaagtgat
gatgaggacatgccatcaggaccggcaccgccggtcaatgacatttaccgaagcagacaa
caaaaacgctcaaaatga
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