Ruditapes philippinarum (Manila clam): 132727311
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Entry
132727311 CDS
T09557
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132727311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132727311
03041 Spliceosome [BR:
rphi03041
]
132727311
03009 Ribosome biogenesis [BR:
rphi03009
]
132727311
03016 Transfer RNA biogenesis [BR:
rphi03016
]
132727311
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132727311
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
132727311
Spliceosome [BR:
rphi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
132727311
Complex C
U4/U6.U5 tri-SnRNP related factors
132727311
Ribosome biogenesis [BR:
rphi03009
]
Eukaryotic type
Pre-60S particles
Helicases
132727311
Transfer RNA biogenesis [BR:
rphi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
132727311
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
U3_assoc_6
BLOC1_2
DUF3638
Motif
Other DBs
NCBI-GeneID:
132727311
NCBI-ProteinID:
XP_060568728
LinkDB
All DBs
Position
Unknown
AA seq
980 aa
AA seq
DB search
MSISSKRTAAEDVNTDQHSKKAKTEGTGSHLEVMQRIQVHTVETVEACLHEVAVPPEEEF
VPLKPVDTEPAKTYPFILDPFQKEALLCLENNQSVLVSAHTSAGKTVVAVYAIAMSLRDK
QRVIYTTPIKALSNQKYRELFEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEI
MREVGWVIFDEIHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVVYTDYRPTPLQHYIFPAGGDGIHLVVDENGEFKEENFNTAMSVLKEAGDAAKGDIK
GRKGGFKNQETNCYKIVKMILERQFAPVIVFSFSKKDCEAYALQMTKLDFNTDEEKELVQ
EVFNNAIDALSDEDKKLPQVEHVLPLLKKGIGIHHGGLLPLLKETIEILFSEGLIKALFA
TETFAMGLNMPARTVLFTSARKFDGKDFRWVTSGEYIQMSGRAGRRGLDDRGIVILMIDE
KMPPAAGKLVLKGAADPLNSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYAAIPDL
IEKLKKTEEQYNKCEVANEDQVSSYYKLRQQLDHLSKELLTYIQKPQYILPFLQPGRLVH
VKNGTDDFSWGMIVNFQKKANQSKSSEEGPVYVAEVLVNMTKESAKSRNSAMVKPSPPGV
LGEMQVIPVLLHLIQEISAVRLYLPKDLRPFDNRQSVGKSIQEVQKRFPDGLPLLDPVED
MGIKEKSMKDVVKKIEAFEHRLFSHPLNKDPKLEEWYNQYEQKVKVANEIKAIKVELKKK
KSLLQMDELKCRKRVLRRLGYCTASDVIELKGRVACEISSGDELMITELLFNGVFNDMTA
QQACALLSCFVFQEGSNDVPKLTESLAGPLRLLQDTARRIARVSKEAKLEIDEEEYVTSF
KPNMMDVVHAWCSGASFFEICKMTDIFEGSIIRCMRRLEETLRQMVQSAKAIGNTELENK
FNEGIRSMKRDIVFAASLYL
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgagtatttccagtaagcggactgcagctgaagatgttaatacagatcaacatagtaaa
aaagcaaagacagagggaactgggagccaccttgaagtcatgcagagaatccaggttcac
acagtagaaactgttgaggcatgcttacacgaggttgctgtgcctccagaagaagaattt
gttccgttaaaaccagtagatactgagccagccaagacatatcctttcatactagatccg
tttcagaaagaagccctgctctgtttggaaaataaccagtccgtgctggtatctgctcac
acttcagctggaaaaactgttgtggctgtgtatgctatagctatgtcgttacgtgacaaa
cagcgtgtaatatacacaacaccaattaaggcactgagtaatcagaagtatagggaattg
tttgaggagtttcaggatgttggtttgatgactggagacgttacaattaaccccacagcc
agttgtcttgtcatgaccacagagattttaaggagtatgttgtacagaggttctgaaata
atgagagaagttggatgggtaatctttgatgaaatccattatatgagagataaagagaga
ggagtggtttgggaagaaacaattattctattaccagacaatgtacattatgtattctta
tcagctaccataccaaatgctagacagtttgctgaatggatatgtcatcttcataaacag
ccatgtcatgttgtgtacacagactacagaccaactccactacaacattatatatttcca
gcaggaggagatggtatacaccttgttgtagatgaaaatggtgaatttaaagaagagaat
ttcaacactgccatgtctgtcttgaaggaagcaggagatgctgctaaaggagacatcaaa
ggaagaaaaggaggatttaaaaaccaagaaacaaattgttacaagattgttaagatgata
ttagagagacaatttgctcctgtgatagtgtttagttttagtaagaaagattgtgaggcc
tacgcactgcagatgacaaaattagatttcaacacagatgaggaaaaggaacttgtacag
gaagtgtttaacaatgctattgatgctctctctgatgaagacaagaaactacctcaggtt
gagcatgttctacctttactaaagaaaggcattggtatacatcatggtgggcttctacca
ttactcaaagaaaccatagaaattctcttctcagagggtttaatcaaggccttatttgcc
acagaaacatttgcgatgggtttaaacatgcctgctagaactgttctattcacaagtgcg
cggaaatttgatggaaaggattttagatgggtgacatcaggggagtatatacagatgagt
gggcgtgctggtaggcgtggcttagatgatcgtggtattgttatattaatgatagatgag
aagatgccccctgcagctggtaaacttgttttaaagggtgcagcagatcctctcaatagt
gcgtttcatttaacatacaacatggtgctaaacttgctgcgtgttgaagaaatcaacccg
gagtatatgttggaaaggtcattctatcagttccagaattatgctgctatacctgatctc
attgaaaaattaaagaaaacagaagagcagtacaataaatgtgaagtggctaatgaagat
caagtgtcatcatattataagttaagacaacagctagatcatctcagtaaagagttattg
acctacatacagaaaccccagtacatcttaccattcctgcagcctggtagacttgtgcat
gtcaaaaatggcacggatgatttcagttggggcatgatagtaaactttcaaaagaaggct
aatcaaagtaagtcatctgaagaggggccagtttatgttgcagaagtattagtaaacatg
actaaagagtctgcaaagtctcgtaactccgcaatggttaaaccaagtcctcctggtgtt
cttggagaaatgcaggttattccagtgctgttacatttgatacaagaaatcagtgctgtt
agactatatctaccaaaagatctgcggccatttgataacaggcagagtgtcggaaaatct
atacaggaggtacagaaaagattccctgatggtctgcccttgttagacccagtagaagat
atgggcatcaaagaaaaatctatgaaagatgttgtaaagaaaattgaagcatttgaacac
agattattctctcatcctttgaataaagatcccaaactggaagaatggtataaccaatat
gaacagaaagtcaaggtagccaatgagattaaagctataaaagtagagttgaaaaagaag
aaatccttgttacaaatggatgagttaaagtgcaggaaaagagttcttagacgccttgga
tactgtacagcttctgatgtgatagaattgaagggcagggtagcttgtgaaataagcagt
ggagatgagctgatgattacagagctattgtttaatggtgtgtttaatgatatgacagca
cagcaggcctgtgctttactgagctgttttgtgttccaagaaggctccaatgatgtacct
aaacttacagaatctctggctggaccactcagattattacaggacacagcacgaaggata
gctagagtaagtaaggaggcaaaacttgaaatagatgaggaagaatatgtgacttcattc
aaaccaaacatgatggatgtggttcatgcatggtgtagtggtgcaagcttctttgagatt
tgtaaaatgacagacatatttgaaggcagtataattagatgtatgagaagattggaagaa
acattaagacaaatggttcagtcagctaaggctattggaaatacagagttagaaaacaag
ttcaatgaaggtataaggagcatgaaaagagacattgtgtttgcagccagtttatattta
taa
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