Ruditapes philippinarum (Manila clam): 132727311 Help Entry 132727311         CDS       T09557                                  Name (RefSeq) exosome RNA helicase MTR4-like   KO K12598   ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] Organism rphi  Ruditapes philippinarum (Manila clam) Pathway rphi03018   RNA degradation Brite KEGG Orthology (KO) [BR:rphi00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     132727311  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:rphi03019]     132727311    03041 Spliceosome [BR:rphi03041]     132727311    03009 Ribosome biogenesis [BR:rphi03009]     132727311    03016 Transfer RNA biogenesis [BR:rphi03016]     132727311 Enzymes [BR:rphi01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      132727311 Messenger RNA biogenesis [BR:rphi03019]  Eukaryotic type   mRNA degradation factors    3'-5' decay     TRAMP complex      132727311 Spliceosome [BR:rphi03041]  Complex B   U4/U6.U5 tri-snRNP components    U4/U6.U5 tri-snRNP related factors     132727311  Complex C    U4/U6.U5 tri-SnRNP related factors     132727311 Ribosome biogenesis [BR:rphi03009]  Eukaryotic type   Pre-60S particles    Helicases     132727311 Transfer RNA biogenesis [BR:rphi03016]  Eukaryotic type   tRNA degradation factors    TRAMP complex     132727311 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk DEXQc_Suv3 Helicase_C ResIII nSTAND3 U3_assoc_6 BLOC1_2 DUF3638 AAA_22 Motif Other DBs NCBI-GeneID:  132727311 NCBI-ProteinID:  XP_060568728 LinkDB All DBs Position Unknown AA seq 980 aa AA seqDB search MSISSKRTAAEDVNTDQHSKKAKTEGTGSHLEVMQRIQVHTVETVEACLHEVAVPPEEEF VPLKPVDTEPAKTYPFILDPFQKEALLCLENNQSVLVSAHTSAGKTVVAVYAIAMSLRDK QRVIYTTPIKALSNQKYRELFEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEI MREVGWVIFDEIHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ PCHVVYTDYRPTPLQHYIFPAGGDGIHLVVDENGEFKEENFNTAMSVLKEAGDAAKGDIK GRKGGFKNQETNCYKIVKMILERQFAPVIVFSFSKKDCEAYALQMTKLDFNTDEEKELVQ EVFNNAIDALSDEDKKLPQVEHVLPLLKKGIGIHHGGLLPLLKETIEILFSEGLIKALFA TETFAMGLNMPARTVLFTSARKFDGKDFRWVTSGEYIQMSGRAGRRGLDDRGIVILMIDE KMPPAAGKLVLKGAADPLNSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYAAIPDL IEKLKKTEEQYNKCEVANEDQVSSYYKLRQQLDHLSKELLTYIQKPQYILPFLQPGRLVH VKNGTDDFSWGMIVNFQKKANQSKSSEEGPVYVAEVLVNMTKESAKSRNSAMVKPSPPGV LGEMQVIPVLLHLIQEISAVRLYLPKDLRPFDNRQSVGKSIQEVQKRFPDGLPLLDPVED MGIKEKSMKDVVKKIEAFEHRLFSHPLNKDPKLEEWYNQYEQKVKVANEIKAIKVELKKK KSLLQMDELKCRKRVLRRLGYCTASDVIELKGRVACEISSGDELMITELLFNGVFNDMTA QQACALLSCFVFQEGSNDVPKLTESLAGPLRLLQDTARRIARVSKEAKLEIDEEEYVTSF KPNMMDVVHAWCSGASFFEICKMTDIFEGSIIRCMRRLEETLRQMVQSAKAIGNTELENK FNEGIRSMKRDIVFAASLYL NT seq 2943 nt NT seq  +upstreamnt  +downstreamnt atgagtatttccagtaagcggactgcagctgaagatgttaatacagatcaacatagtaaa aaagcaaagacagagggaactgggagccaccttgaagtcatgcagagaatccaggttcac acagtagaaactgttgaggcatgcttacacgaggttgctgtgcctccagaagaagaattt gttccgttaaaaccagtagatactgagccagccaagacatatcctttcatactagatccg tttcagaaagaagccctgctctgtttggaaaataaccagtccgtgctggtatctgctcac acttcagctggaaaaactgttgtggctgtgtatgctatagctatgtcgttacgtgacaaa cagcgtgtaatatacacaacaccaattaaggcactgagtaatcagaagtatagggaattg tttgaggagtttcaggatgttggtttgatgactggagacgttacaattaaccccacagcc agttgtcttgtcatgaccacagagattttaaggagtatgttgtacagaggttctgaaata atgagagaagttggatgggtaatctttgatgaaatccattatatgagagataaagagaga ggagtggtttgggaagaaacaattattctattaccagacaatgtacattatgtattctta tcagctaccataccaaatgctagacagtttgctgaatggatatgtcatcttcataaacag ccatgtcatgttgtgtacacagactacagaccaactccactacaacattatatatttcca gcaggaggagatggtatacaccttgttgtagatgaaaatggtgaatttaaagaagagaat ttcaacactgccatgtctgtcttgaaggaagcaggagatgctgctaaaggagacatcaaa ggaagaaaaggaggatttaaaaaccaagaaacaaattgttacaagattgttaagatgata ttagagagacaatttgctcctgtgatagtgtttagttttagtaagaaagattgtgaggcc tacgcactgcagatgacaaaattagatttcaacacagatgaggaaaaggaacttgtacag gaagtgtttaacaatgctattgatgctctctctgatgaagacaagaaactacctcaggtt gagcatgttctacctttactaaagaaaggcattggtatacatcatggtgggcttctacca ttactcaaagaaaccatagaaattctcttctcagagggtttaatcaaggccttatttgcc acagaaacatttgcgatgggtttaaacatgcctgctagaactgttctattcacaagtgcg cggaaatttgatggaaaggattttagatgggtgacatcaggggagtatatacagatgagt gggcgtgctggtaggcgtggcttagatgatcgtggtattgttatattaatgatagatgag aagatgccccctgcagctggtaaacttgttttaaagggtgcagcagatcctctcaatagt gcgtttcatttaacatacaacatggtgctaaacttgctgcgtgttgaagaaatcaacccg gagtatatgttggaaaggtcattctatcagttccagaattatgctgctatacctgatctc attgaaaaattaaagaaaacagaagagcagtacaataaatgtgaagtggctaatgaagat caagtgtcatcatattataagttaagacaacagctagatcatctcagtaaagagttattg acctacatacagaaaccccagtacatcttaccattcctgcagcctggtagacttgtgcat gtcaaaaatggcacggatgatttcagttggggcatgatagtaaactttcaaaagaaggct aatcaaagtaagtcatctgaagaggggccagtttatgttgcagaagtattagtaaacatg actaaagagtctgcaaagtctcgtaactccgcaatggttaaaccaagtcctcctggtgtt cttggagaaatgcaggttattccagtgctgttacatttgatacaagaaatcagtgctgtt agactatatctaccaaaagatctgcggccatttgataacaggcagagtgtcggaaaatct atacaggaggtacagaaaagattccctgatggtctgcccttgttagacccagtagaagat atgggcatcaaagaaaaatctatgaaagatgttgtaaagaaaattgaagcatttgaacac agattattctctcatcctttgaataaagatcccaaactggaagaatggtataaccaatat gaacagaaagtcaaggtagccaatgagattaaagctataaaagtagagttgaaaaagaag aaatccttgttacaaatggatgagttaaagtgcaggaaaagagttcttagacgccttgga tactgtacagcttctgatgtgatagaattgaagggcagggtagcttgtgaaataagcagt ggagatgagctgatgattacagagctattgtttaatggtgtgtttaatgatatgacagca cagcaggcctgtgctttactgagctgttttgtgttccaagaaggctccaatgatgtacct aaacttacagaatctctggctggaccactcagattattacaggacacagcacgaaggata gctagagtaagtaaggaggcaaaacttgaaatagatgaggaagaatatgtgacttcattc aaaccaaacatgatggatgtggttcatgcatggtgtagtggtgcaagcttctttgagatt tgtaaaatgacagacatatttgaaggcagtataattagatgtatgagaagattggaagaa acattaagacaaatggttcagtcagctaaggctattggaaatacagagttagaaaacaag ttcaatgaaggtataaggagcatgaaaagagacattgtgtttgcagccagtttatattta taa

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