Ruditapes philippinarum (Manila clam): 132727535
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Entry
132727535 CDS
T09557
Name
(RefSeq) intraflagellar transport protein 140 homolog
KO
K19672
intraflagellar transport protein 140
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
rphi03037
]
132727535
Cilium and associated proteins [BR:
rphi03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
132727535
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
TPR_IF140_C
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_HPS5
WD40_WDHD1_1st
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_EML
WD40
PEP5_VPS11_N
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_TEP1_2nd
TPR_IFT80_172
PPR_2
TPR_COPA_B
EIF3I
TPR_GEMI5
WDR54
VPS11_N
Beta-prop_IFT122_1st
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
132727535
NCBI-ProteinID:
XP_060569057
LinkDB
All DBs
Position
Unknown
AA seq
1493 aa
AA seq
DB search
MAVYFDHRLDTERSGINTDVSWFSGNPMLAVTSYSDETGGAVNLFLDEGERLLNVKLQRS
CQVTSSSWHPTKKIIAVGFENGELLIWNAVDCELFEGLPLHKHAITVLHWSSNGSRLISG
DKSGVVMVWKSDGKGRLQQNPLHQHHCQEPLSQIIFKPQPPPDPSTDINQLAKAAVRGDE
SALDMFNWKKGKSAGKDPLFSSQEALSFFIGGASGGVYFVSEGGQCSQAFKADGPILKLL
YYEEKNILITVTEGLSLFQHAVMPEGDTKEMMKVKLSGRGDKPVIDWAGKGILATSTGEG
VIRMWELENEENYILHLDGHSGYDPNENITCLAFSEKKGTLAGGTNMGNVALWKYTPPVG
NKKVDGEQKWKLQTPATVEGPVSQVTWGSTKDLLAVNTIAHVFMLNEHVMSANFRDQTAV
VQFGPSSLSIEVFSNGTHHDLKTDIQVKGIYTTKDALAVWNGRRVILYEYSEDKSTIKAS
GSFTTDSMIICIYEQNVYSIEMQKVQVRTFQGTVKQSINFSEVEGQPVCLDICGTYLLIG
TDIGILKVFDLSRREAKPHSHPKNLHELVPGFGSLLACKVNCNGTKVSAAIKMQGGTQTD
PKLYFWDIETDSLSYFNFETGKGEQDDYPPEQMVGMQSGSAIEMSDADRGKDQAAKDIAG
RFPITHHWDAHDPKLVVCEARILPRTDSKEEKKLKATLTKQIEEGPVEVMVVSLFCTPEN
GILIQDSFPLSDDYNCLLGIEVPYHYFVRKNETSEDENANQESGHLVRPDTATVIYPKLV
SRSTMRDFVGLEKSDKQTREAMLNFSYYLTIGNMDEAFKAIKLIKSESVWENMAKMCVKS
RRLDVASVCLGNMGHARGAKALREALKEPELDAKVATLAMQLGLFDDAERLLRNCKRYDL
LNEYYQNAGQWGKAMETAEMYDRIHLRTTYYSYAKHLEANGEMTEAIPNYEKSDTHRFEV
PRMLFDEPDALEQYILKHKDKSLHKWWAQYMESLGEMDTALQFYEMARDYLSLVRVYCYC
GNMDKASEICNETGDKAGCYHLARQLENQDHIKEAIHFFQRAEAFGNAIRLCKEHSYEDQ
MMNLALMGRPEDMMEAARYYEDKPGQQDKAVMLYHKAGNFSRALDLSFRAKQFGALQMIS
GDLDERADPELLQRCADFFLENGQFDKAVDLLGIGKKYWEALKICMDQHVEVTEDLAEKL
TPTKEELGGDTMERVKILEAIAEVCMHQGQYHLATKKFTQAGNKMKAMKALLKSGDTEKI
IFFAGVSRQKEIYVMAANYLQSLDWRKDPEVMKNIIGFYTKGRALDALASFYDACAQVEI
DEYQNYDKALGALGEAFKCLSKAKMTDEALQEERLGQLKNKITLIKKFVNARRIYDEDSE
EAIKQCQVLLEEPDLDSGVRIGDVYGFIIEHYARKERWKAAYNAMDEMKGRISGVNMSYY
VNMRTIQAVHQALDIPLSNTINAGQMNGYRSAGHEDEDGDMVEEDVPMYNDDL
NT seq
4482 nt
NT seq
+upstream
nt +downstream
nt
atggcggtctattttgaccaccgcctggatacagagcgctctgggatcaacacagatgta
tcatggttcagtggaaatcctatgcttgctgtgacatcatatagtgatgaaacaggagga
gccgtcaaccttttccttgatgagggagagagattactgaatgttaagttacaaagaagc
tgccaggtaacatcatcgtcatggcacccaacaaaaaagataattgctgttggctttgag
aatggtgaattactgatatggaatgctgtagactgtgagttatttgaaggtttacctcta
cataaacatgctataacagtacttcactggagctccaatggatcaaggttaatctctggt
gacaagtcaggtgttgttatggtatggaagtctgatggtaaagggaggttacaacagaat
cctctacatcaacatcattgtcaagaaccactgtcacagatcatctttaaacctcaacca
ccaccggatccttccacggatatcaatcagctggcaaaggcagctgtgagaggagatgaa
tctgcacttgatatgtttaactggaagaagggaaaatcggcgggcaaggacccactattt
agttcacaggaagccctctctttctttattggtggagctagtggtggtgtatactttgtg
agtgagggtgggcagtgtagccaggcatttaaagcagacggtcctatattgaaactactg
tattatgaggagaagaacatactgattacagtgacagaaggtttatcattgttccagcat
gctgtaatgccggaaggtgacacaaaggaaatgatgaaggtaaaattaagtggaagggga
gacaagcctgtgattgactgggcggggaaaggaatattagctacatctactggtgaagga
gttatcaggatgtgggagctggagaatgaggagaattatatactacatcttgatggtcac
agtggatatgatcctaatgaaaacattacatgtttagctttctctgaaaagaaaggtact
ctggcaggtggtacaaatatggggaatgtagccttgtggaaatatacaccacctgtaggt
aataagaaagttgatggtgaacagaaatggaaactacagactccagctacagtggaaggt
ccagtttcacaagttacttggggttcaacaaaagatttgcttgctgtgaacactatagct
catgtgttcatgttgaatgaacatgtgatgagtgctaacttcagagatcagactgctgta
gtacagtttggtcctagttcactctctattgaggtgttctctaatggaacacatcatgat
cttaaaacagatatacaagtcaaaggaatatacacaacaaaggatgctctagcggtatgg
aatggtagacgtgtaattctatatgaatattcagaggataagtcaactataaaggcctct
ggtagcttcacaacagattctatgataatatgtatatatgaacaaaatgtgtacagtata
gagatgcagaaagttcaagttagaacattccagggtacagtaaaacagtccataaacttc
agtgaggtagaaggacagcctgtatgtttagatatatgtggaacctacctgttgataggc
actgacataggcatactgaaggtttttgatttgtcaagaagagaagctaagccacacagt
cacccaaagaatctacatgagctggttcctggttttggaagtttattggcatgtaaagta
aactgtaacggtaccaaagtcagtgctgctatcaaaatgcaaggtggtactcagacagat
cccaagttgtatttctgggatatagagacggattctctgtcatattttaactttgagacg
ggtaaaggagagcaggatgattatccaccagaacagatggtcggtatgcagtccggtagt
gctatagaaatgagtgatgctgatagaggtaaggatcaagctgctaaggatattgctggt
cgttttcctatcacccatcactgggacgctcatgatccaaagttagtcgtgtgcgaggct
cgcattctccccaggacagacagtaaagaagagaaaaaactgaaagccacgctaaccaaa
caaatagaggagggtcctgtggaggtaatggtagtatcactgttctgtacaccagagaat
ggtatacttatacaagacagcttcccgctaagtgatgactacaactgtctacttggtatt
gaagttccttatcactactttgttagaaagaatgaaactagtgaagatgaaaatgctaac
caggagtccggtcatcttgtaagaccggacacagcaactgtgatataccctaaacttgtg
tcacgttcaaccatgcgtgactttgtcggtctcgagaaaagcgataaacagacacgggag
gccatgttgaatttcagttattatctgaccataggcaacatggacgaggctttcaaagca
attaaactgattaaaagtgagtcagtatgggagaatatggccaagatgtgtgtcaagtct
aggagactggatgtagccagtgtatgcctgggaaatatggggcatgctcggggagctaaa
gccctgagagaagctcttaaagaaccagaattagacgctaaagttgccactttagcaatg
cagttaggcctttttgatgatgcagaaagattacttaggaattgtaaaagatatgacttg
ctgaatgaatattatcagaatgcaggccagtggggaaaggcaatggaaacagcggagatg
tatgacaggattcatttacgtaccacatactacagctacgctaaacatcttgaagccaac
ggagaaatgacagaggctataccaaattatgagaaatcggacacacatagatttgaagta
cccagaatgctctttgatgaacctgatgctttagaacagtatatactcaaacataaagat
aaatccttgcataaatggtgggcccagtacatggagagtttgggtgaaatggacacagca
ttacagttttatgaaatggccagggattatttgtctctggtgcgagtctactgttactgt
ggcaatatggacaaggcatcagagatatgtaatgagacaggggataaagcaggatgttat
catttagctcgtcaactagaaaaccaggaccatatcaaggaggccatacatttcttccag
agggcagaggctttcggaaatgccattaggttgtgcaaggaacacagttatgaagatcag
atgatgaacctggcgttgatgggacgaccggaggatatgatggaggcagcgaggtactac
gaggataaaccaggacaacaggataaagctgtcatgttgtatcataaggctggtaatttc
tcacgagccttggacctgtcgttccgtgctaagcagtttggtgctctacagatgatatct
ggcgaccttgacgagagagctgaccctgagttgttacagagatgtgcagactttttcctc
gaaaatggacagtttgataaggctgttgatcttcttggcattggcaaaaagtattgggag
gcacttaaaatatgcatggaccagcatgtggaggttacagaagatctggcggagaagttg
acacctacaaaggaggagctaggtggagacaccatggagagggtgaagatactggaggct
atagcagaagtttgcatgcaccagggacagtatcatctagccaccaagaagttcactcag
gccggaaataaaatgaaggcaatgaaggcattattaaaatctggtgatactgagaaaatc
atcttctttgctggtgtatccagacaaaaagaaatctatgtcatggcggcaaattaccta
caatctctagattggaggaaagatcccgaggtcatgaaaaatatcataggtttctatacc
aaaggtcgggcattagacgctctggcatcattctatgatgcctgtgctcaggtggaaatt
gatgagtatcaaaattatgacaaggcccttggtgcgctgggcgaggcatttaaatgtctt
agcaaggccaagatgacagacgaagctctacaagaagagagattaggtcaactgaagaat
aaaatcacacttataaagaaatttgtgaatgcaagaaggatatatgacgaagattcagag
gaggctattaaacagtgtcaggtacttctagaggaaccagatcttgacagtggagtgaga
ataggcgatgtttatggctttattattgaacattatgccaggaaagagcgctggaaggct
gcctataatgctatggatgagatgaagggtagaatatcaggtgtgaacatgtcttactat
gtgaatatgcgaacaatacaagctgttcatcaagctttggatataccacttagtaacacg
ataaatgccggccagatgaacgggtaccggtcggcaggtcacgaggatgaagatggagac
atggtggaggaggatgttcccatgtataatgatgatctttga
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integrated database retrieval system
