Ruditapes philippinarum (Manila clam): 132728041
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Entry
132728041 CDS
T09557
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132728041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rphi03041
]
132728041
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132728041
Spliceosome [BR:
rphi03041
]
Complex C
Other components
Step II factors
132728041
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RVT_1
Helicase_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
nSTAND_NTPase5
T2SSE
Sigma54_activ_2
SRP54
AAA_7
AAA_30
Flavi_DEAD
AAA_16
Motif
Other DBs
NCBI-GeneID:
132728041
NCBI-ProteinID:
XP_060569633
LinkDB
All DBs
Position
Unknown
AA seq
1395 aa
AA seq
DB search
MTSYMDPDNDPSLHRLEGSSGNQAGGLVIMKKNPTSQTDKHSFKKPSLLGLDKLAAAKRQ
SEEETENVKKKSKVTSYRDDYDDDSSDSDDEVENESRKSDKDRKKERHYRQSRIDTPSHP
GGVSNAVLDRRQDRHDRDKDKGVYASSKHHDRDRKKDRKDRERDRRHDRDRDRDRRKNRD
RDGDYRSERGSERRDRNSDRRDRHSERSSRSSRDWNDTPRRRNEPATPNIRPKDTPSRSA
WDDDEDFTPPKRSSWDMLTPSGYDDRESDLDTPSDYRRSKSSRSRNYSKETPLPTPSYKY
NEWMDDRKKIKYTPKDSSRQERVDLEFKDDDDKADWEEEQKRLDREWYGLDEGYDDQHNP
FAGMSENYTKKKEEEIEKRKKNRMSARQRQINQDIEKWETNRMLRSGVVEKLNYDEDFEE
ENEARVHLLVHNIVPPFLDGRIVFTKQPEPVIPIKDPTSDMAVVSKKGCAVVRVHREQKE
RRKAQKKEWELAGTRIGEIMGVKKKEEEDEREEKDYKQDYKFADLLQDKTDAVSDFAKRK
TMSQQRQYLPIFAVRNELLNIIRDNSVVIIVGETGSGKTTQLTQYLHEDGYTKYGMVGCT
QPRRVAAMSVAKRVSEELGVKLGDEVGYAMRFEDCTSENTMIKYMTDGILLRESLRESDL
DHYSAIVMDEAHERSLNTDVLFGLLRDVVSRRQDLKLIVTSATMDAGKFAQFFGNVPTYT
IPGRTFPVDILYAKNPVEDYVDAAVKQALQIHLMGLEGDILVFMPGQEDIEVSCELLGER
LEELDDAPPLAILPIYSQLPSDLQAKIFQKAPDGIRKCIVATNIAETSLTVDGIMFVVDS
GYCKLKVFNPKVGMDALQVFPISQANANQRSGRAGRTGPGQAYRLYTARQYKDELLTMTV
PEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPQDNILNSMYQLWILGALDNTGALTPMG
RNMVEFPLDPALSKMLIKSLEMECSAETLFFRRDRQSNGGGIVVFVKENYPCVRREDLEN
TNMEIILLEIKPFNQKPFILGYVYRPPSSLSSWNSMYEDTLEKLICEDKELLIMGDFNID
FKTENSLKSNWLKLNDSYNLCQMCTQHTLPEINDSQENSNFSSKFEIPLVTKEFVQKELL
NLDESKSTGLDELGPKYLKMSADIIANSITYIMNLSISNDIFPNQFKIAKVTPIFKKGSK
SDKCNYRPISILPILTKIIERHVSNNLKDFLESNNLIYNYQSGFRKDHSCETALLSIVDR
WINAINDGKVVGTLFLDLSKAFDLVDHSILIQKLQTLNISNKTILWFKSYLQDRLQKVSI
SGKLSKPGHIKSGVPQGSVLGPLLFHIYINDLPNELKEIFTDIFADDTTISAVGTTYLEV
QTKLQTALDNWLQKQ
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atgacttcatacatggatccagataatgatccatcacttcatcgtttagagggatcatca
gggaaccaggctggagggcttgttatcatgaaaaagaaccctacatcccagactgacaaa
cactctttcaaaaagccatctctgcttggtctagacaaacttgctgcagcaaaaagacag
tcggaggaggaaacagaaaatgttaaaaagaagtcaaaggtgacgtcctacagggatgat
tatgatgatgacagcagtgattctgatgatgaagttgaaaatgaatctagaaaatctgat
aaggatagaaagaaggaaagacactaccgacaatccagaattgatacaccgtctcatcct
ggaggtgtaagtaatgcggtattagaccgacgtcaagaccggcatgacagagataaagac
aagggagtatatgcttcatctaaacatcatgacagggatagaaagaaggacagaaaggat
agagaaagagacaggcgacatgatagagatagggatagagatagacggaagaacagagat
agagatggagactaccgtagtgagagaggttcagagcgcagagacaggaactctgatcgt
cgagatcgacattctgaaagaagttctcgcagttctagagactggaatgatactccacgc
agaagaaatgagcctgcaactcctaatataaggccgaaagacacaccgtctagatctgca
tgggacgatgatgaggattttacacctccaaaacgatcaagttgggatatgctcacacct
agtggatacgatgaccgggagagtgaccttgatacaccctctgattatagaagatctaaa
agttcaagatcaaggaattacagtaaagaaacacctttacctacgccgtcatacaaatac
aatgaatggatggatgatagaaagaaaataaaatatacacctaaagattccagcagacaa
gagagggtagatttagagttcaaggatgatgatgataaagcagactgggaggaagaacag
aagagacttgatcgagaatggtacggtctcgatgaaggttatgacgaccaacataatcca
ttcgctggcatgtcagagaactatacaaagaagaaggaggaggaaatagaaaaaagaaag
aaaaatcgaatgtctgcaagacagcggcagataaatcaggatatagaaaagtgggagaca
aacagaatgttacgtagtggcgttgtggagaagttaaattatgatgaggactttgaggag
gagaatgaagccagggttcatcttcttgtacataatatagtaccaccattcctggatggg
agaattgtgttcactaaacagcccgaacctgttatacctataaaggatcctacctcagac
atggcagtggtatctaagaaaggctgtgctgtagtcagggtacacagagaacagaaggaa
agaagaaaagctcagaaaaaggaatgggagcttgctggaacaaggataggggagataatg
ggggtcaagaaaaaagaagaagaggatgaacgtgaggagaaagactacaaacaagactac
aagtttgctgatttactacaagacaagaccgacgctgtcagtgattttgctaagaggaaa
acaatgtcacaacagagacaatacctaccaatctttgctgtcaggaatgagttattaaat
attatacgagataacagtgttgtgatcattgtcggagaaacaggatcaggaaagacaaca
cagcttacacagtatttacatgaagatggttacaccaagtatggtatggtaggttgtaca
caacctcgtagagtagcagccatgtccgttgctaagcgtgtatccgaggagttgggagtt
aaacttggagatgaggtcggctatgctatgagatttgaggactgtaccagtgagaataca
atgatcaagtatatgactgatggtatattgttacgagaatctctgagagagtcagatctg
gatcattacagcgctatagtgatggacgaagctcacgaacgttccctcaacacagatgtt
ctgtttggactgttaagagacgtagtttctagaagacaggacttaaagttgattgtaacc
tcggcaactatggatgctggaaaatttgctcagttctttggcaatgtgccaacgtataca
attccgggaagaacgtttcctgtggacatcctgtatgccaaaaatcctgtggaagattat
gttgatgcagctgtcaaacaagctttacagattcacttaatgggtcttgaaggtgatatc
ttagtgttcatgccaggtcaagaggatattgaggtctcatgtgagttattaggagagaga
ctagaagaattagatgatgctcctcccctggcaattctacctatatattcccagttacct
agtgatctccaggctaaaattttccagaaagctccagatggaataaggaaatgtattgta
gccacaaatattgctgaaacctctctcacagttgatggaatcatgtttgtagtggattct
gggtactgtaaacttaaagtgttcaatcctaaagtcggtatggatgcccttcaggtcttc
cctattagtcaggcaaatgccaatcagaggtcagggagggcaggaagaacaggtccagga
caagcttacagattatatacagccaggcagtataaagatgaacttctcacaatgaccgtc
cccgaaatacaacgtacaaacctcgccaatgttgtactactgttgaaatcccttggtgtc
caggatctgctccagttccattttatggacccaccacctcaggataacatattaaactcc
atgtaccagttatggattttaggagcattagacaatacaggggcattaactccgatggga
agaaatatggttgagttcccgctagatccagccctctccaaaatgttgatcaaatcgcta
gagatggagtgcagtgctgaaactctcttctttcggagagatcgacaatcaaatggtgga
ggtattgttgtatttgtgaaagaaaactacccttgtgttaggcgtgaagatcttgaaaac
accaatatggaaattattttactggaaattaaaccatttaatcaaaaaccatttattctt
ggatatgtgtatcgaccaccatcatccctgtcatcttggaactcgatgtatgaagatacc
ctggaaaaattaatttgtgaagacaaggaactgttgataatgggagactttaatattgat
tttaaaactgaaaattcattgaaatcaaactggttaaaactaaatgacagttacaatctt
tgccaaatgtgtacgcaacacacactcccagaaattaatgacagccaagaaaattcaaac
ttttcttctaaatttgaaataccacttgtaacgaaagagtttgttcaaaaagagttacta
aatcttgacgaaagcaagtctacaggtctggatgaacttgggccaaaatatctaaaaatg
tcagctgacatcatagcgaattcaattacatatattatgaacttaagcatttctaatgat
atattcccaaaccaatttaagattgcaaaagttacacctatatttaaaaaaggttctaaa
agtgacaaatgcaactacagaccaatctcaatccttccaatactaaccaaaatcattgaa
cgccatgtctctaataacctcaaagactttctagaatctaacaacttaatctataactat
cagtctggctttagaaaagatcactcctgtgaaactgccttactttcaatagtagatagg
tggataaatgctattaacgatggaaaagttgttggaacactgtttctcgacctttcaaag
gcgttcgacctagtagatcactctattcttatccagaaactacaaacacttaatatcagc
aataaaacaatactgtggtttaagtcctacctacaggataggcttcaaaaggtatctata
tctgggaaactatcaaaaccaggacatataaaatcaggagttccccaaggatctgttctt
ggtccacttttatttcatatatatataaatgatcttccaaatgaactaaaggaaattttt
acagatatatttgctgatgatacaactatttctgcagttggaacaacttatctggaagta
caaacaaaattacaaactgcattagataattggctacagaaacaatag
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integrated database retrieval system
