Ruditapes philippinarum (Manila clam): 132728952
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Entry
132728952 CDS
T09557
Name
(RefSeq) WD and tetratricopeptide repeats protein 1-like
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rphi04121
]
132728952
Ubiquitin system [BR:
rphi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
132728952
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_IFT122_1st
TPR_1
TPR_2
Beta-prop_RIG_2nd
Beta-prop_SPT8
TPR_11
Beta-prop_IFT140_1st
TPR_8
TPR_12
eIF2A
ANAPC3
WD40_RFWD3
TPR_3
Motif
Other DBs
NCBI-GeneID:
132728952
NCBI-ProteinID:
XP_060570664
LinkDB
All DBs
Position
Unknown
AA seq
698 aa
AA seq
DB search
MEFKTNLLKRKLLREINENIGARFVREQQVTSTLIKRLGLEDELEGHIGCVNCLEWNEKG
SMLASGSDDTQVIVWDPFRKKKLTSIQTGHHGNIFSVKFLPNSNDNIVVSGAADSKIRVH
DIEGKETTHVFACHASRVKRIATAPKVPFMFWSAAEDGCVMQFDLRCPELCHSNSKNVLI
NLDSHVGGQAEFKCIAINPARPELMAVGANDPYVRMYDRRMLTCQSLKMSDDGHQRFSST
EEFPLPRGCVEYYVPGHIPQKKDDYRKKLRALAATYVTFSPDGTELLTNLGGEQIYLFDV
NKKRSIQKFDISMVLNSNGIVKESCHASVNGYSTYRNGSTTNGVVTNGVSKHLHDSVQAP
HPNAQGDHEKPVKKHKTEKKPLPPLVESLKKKANTYFEKEQYTKAIILYNQAIACAPHAS
MLYGNRAAAFMKRKWDGDMYAALRDCHNALRLDLNHLKAHFRLAKCLNELSWSKEAFECL
NHFKSKFPDYATSRACEQLDKDIRAAIFSKTESDESSKNKKGVCGTDFFQSKSQPSELEQ
IWRAEANDYEARFCGHCNTTTDIKEANFFGSHGQYIVAGSDDGSFFIWEKCTTNIVRVLR
GDESIVNCLQPHPSHCLLATSGIDPVVRLWSPQPEDGKKNDREIDNSDDAALANQKRMNA
DPLEVMLMNMGYRLSSVDDSDGDSDRRGSEAQVTCPTS
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggagtttaaaactaatttgttgaaaagaaaacttctcagagagataaatgagaatatt
ggtgcaaggtttgttagagaacagcaagtgacaagtactcttattaaacgtcttggtctc
gaggatgaactcgaaggtcacatcggctgtgttaattgtctggaatggaatgagaaagga
agtatgttggccagtggttcggacgatacacaagttattgtgtgggacccttttaggaag
aagaaactgaccagtatacagactggtcaccatggaaacatattctcagtaaagttttta
cccaattctaatgacaacatagtggttagtggtgctgcagatagcaagattagagtacat
gacattgaggggaaagaaacaacacatgtgtttgcatgtcatgcgagcagggtaaaacgt
atagccacggcaccaaaagttccatttatgttctggagtgcagcagaagatggatgtgtc
atgcaatttgatttgagatgccctgaattgtgccattcaaacagtaagaatgttttgatc
aatctagattcacatgtcggtggtcaggcagagtttaaatgtattgccatcaatccagca
agaccggagctgatggctgttggagcaaatgatccgtacgtccgcatgtatgacaggaga
atgttaacatgtcaaagtttaaaaatgtcagatgatggacatcaaagattttcttctaca
gaagaatttcctctcccacgaggttgtgtagaatattatgtaccaggtcatataccacag
aagaaagatgattataggaagaaattacgcgctctcgcagctacgtatgtgacatttagt
cctgatggaactgaattactaacgaaccttggcggggaacaaatctacttgtttgatgtg
aataaaaagcgtagcatacaaaaatttgatatatccatggttttaaattccaatggcatt
gtcaaagagtcatgtcatgctagtgtgaacggatatagtacatatcgtaatggatctacg
acaaatggagttgtgactaatggtgtgagcaagcatttacatgattccgtccaggctcca
catcctaatgcacaaggagaccacgagaaacctgtgaaaaaacataaaacagaaaagaag
ccattgccaccactagtggagagtttgaaaaagaaagcaaatacatatttcgagaaagaa
caatacacaaaagctattattctgtacaaccaggcgattgcatgtgccccacatgcctcc
atgctgtatggcaacagagctgcagctttcatgaagaggaaatgggatggggacatgtac
gctgcgttacgagattgtcacaatgcccttcgtcttgacctcaatcatcttaaagctcat
ttcagacttgctaagtgtcttaatgaactgtcatggagtaaagaggcatttgagtgtctt
aatcattttaaaagtaagtttccagattatgcaacatcacgggcatgtgaacagctggac
aaagatataagggcagctattttctcaaaaacagagagtgatgaaagcagcaagaacaag
aaaggtgtgtgtgggacagattttttccaaagtaaatcacaaccatcggaactggagcag
atatggagggctgaggccaatgattatgaggctagattctgtggacattgcaacacaact
acggacattaaagaagccaacttttttggaagtcatggacaatatatagtagcaggatct
gacgatggttcttttttcatctgggagaaatgtacgacaaacatagttcgtgttttacgc
ggtgacgagtcgatagtgaattgtttacagccacacccctctcattgtctcctagcaacc
agtggtatagatccagtagtcaggttatggagtccacagccagaggatgggaagaaaaat
gatcgtgaaatagataattcggacgatgcagctcttgccaatcaaaaacgaatgaacgcc
gaccctcttgaggtgatgttaatgaacatggggtatagacttagtagcgttgatgatagt
gacggggacagtgacaggcgtggtagcgaagctcaggttacgtgtccgaccagttga
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