Ruditapes philippinarum (Manila clam): 132729359
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Entry
132729359 CDS
T09557
Name
(RefSeq) threonine--tRNA ligase 1, cytoplasmic-like isoform X1
KO
K01868
threonyl-tRNA synthetase [EC:
6.1.1.3
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
132729359
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
rphi01007
]
132729359
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rphi03016
]
132729359
Enzymes [BR:
rphi01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.3 threonine---tRNA ligase
132729359
Amino acid related enzymes [BR:
rphi01007
]
Aminoacyl-tRNA synthetase
Class II (C/G)
132729359
Transfer RNA biogenesis [BR:
rphi03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
132729359
Prokaryotic type
132729359
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA-synt_2b
TGS
HGTP_anticodon
tRNA_SAD
bHLH_INO2
Motif
Other DBs
NCBI-GeneID:
132729359
NCBI-ProteinID:
XP_060571108
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MLSLVIKIWDCKTSLSACVVPLNSASMADNVENKLEKMDISEKKKSQKGKKAKAEAAGDQ
VDKLKPMDPPPEFLASRQVLWDKLKKEYDDWVAAQERKPINVTLPDGKVVEGKAWETTPY
DVAKGISQGLADNTVIAKVNDVLWDLDRPLEQDATLQLLKFDDKDGEYVFWHSSAHILGE
AMECLYGGHLCYGPPIEGGFYYDMWSNRQVSSNDYPVIENRVKQIVKDKQPFERLVMTKE
NLLKMFEYNEFKKRIITEKVTTPTTTVYKCGPLIDLCRGPHVRHTGKIKSMAVTKNSSTY
WEGKADAESLQRIYGISFPDPKQMKEWKHFQEEAAKRNHRKIGVDQELFFFHELSPGSCF
FLPRGAHIYNTLINFMKSEYRKRGFQEVVSPNIYNHKLWETSGHWQHYSDCMFKFDIEKE
KYGLKPMNCPGHCLMFDHRIRSHKELPLRMADFGVLHRNELSGALSGLTRVRRFQQDDAH
IFCAPEQIEQEIMGCLDFLKFVYGVFGFTFELKLSTRPEGFLGEVSLWDMAEKDLATCLD
KSGLKWELNPGDGAFYGPKIDITIMDALKRSHQCATIQLDFQLPIRFNLGYIGASADGEK
LRPVIIHRAILGSVERMIAILCESYGGKWPFWLSPRQAIVIPVAPAFDDYALKVKQQIHD
AGFLCDAELDASNTLNKKVRNSQLAQYNFILVVGQKEAHSGSANVRTRDNNVHGERSIDK
IIGRFADFSASRCGDAEEQF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgctcagccttgtaataaaaatttgggattgtaagacctcgctcagcgcatgcgtcgtg
ccacttaattcagcaagcatggccgacaacgtggaaaacaaactggaaaagatggatata
tctgagaagaaaaagtcacagaaagggaagaaagctaaagcagaggctgctggtgatcag
gttgataaactaaaaccgatggatcccccaccagaatttcttgcatcaagacaagtatta
tgggataaattaaaaaaggaatatgatgactgggtggcagcacaggaacgtaaaccaatc
aatgtgacactgcctgatgggaaggttgttgagggcaaggcatgggagactactccatat
gatgttgctaaaggtatcagccaaggtttggcagacaacactgtaatagcaaaggtgaac
gatgtattatgggaccttgatcgtccattagaacaagatgcaacattacagttgctaaag
tttgatgataaagatggagagtatgtattctggcattccagtgcacatatattaggtgag
gccatggaatgtttatatggtggacatctttgttacggtccacccatagagggcggtttc
tactacgacatgtggtcaaacagacaggtatcaagcaatgattaccctgtgatagagaat
agagtaaaacaaattgtgaaagataagcaaccatttgagagacttgttatgaccaaggaa
aatcttctaaagatgtttgagtacaatgagtttaaaaaaagaatcatcactgaaaaggtt
accaccccaacaactactgtgtacaaatgtggacctttgatagatctgtgtagaggacct
catgtacgtcatactggtaaaatcaagtcaatggctgtcactaaaaattcatctacatat
tgggaaggtaaggcagatgccgagtctcttcagagaatttatggaatctcattcccagat
cccaaacagatgaaggaatggaaacatttccaggaggaggcagctaaaagaaatcataga
aaaattggagtagatcaggagttattcttcttccacgaattgagtcctggttcatgtttc
tttttgccacgtggagcacatatatataacactcttataaactttatgaagagtgagtac
agaaaacgtggctttcaagaggttgtgtcaccaaacatatacaatcataagttatgggaa
acttcaggccattggcaacattactctgattgcatgttcaagtttgatatagaaaaagaa
aaatatggcctgaaacctatgaattgtccaggacattgtttgatgtttgaccaccgtatc
agatcgcacaaagaactaccattgagaatggctgactttggcgtgctacacagaaacgag
ttgtccggggctctcagtggattgactcgtgtacgaagattccaacaagacgatgctcac
atattctgtgcacctgaacagattgagcaagaaattatgggttgtttagattttttgaag
tttgtgtatggtgtttttggattcacatttgagttgaagttgtcaacccgacctgaaggt
ttcctaggtgaagtttcattgtgggatatggctgagaaggatcttgcaacgtgcttggat
aagtctggtctcaaatgggagttgaacccaggtgatggtgctttctatggtccaaaaatt
gacatcaccattatggatgcattaaaaaggtcccatcagtgtgccactatacaacttgat
ttccagttgcctatcagatttaatctaggctacattggggcgtctgctgacggggagaag
ttacgacctgtgatcatccatcgtgctatactgggttccgtggagagaatgattgctatc
ctctgtgaaagttatggtggaaaatggccattctggttgtccccaaggcaagctatagta
ataccagtggctccagcatttgatgattatgctttgaaggtaaaacaacaaatccatgat
gctggatttctatgtgatgcagaacttgatgcctccaatactttgaataaaaaagttaga
aactcgcagttagctcaatataactttattctagtggtaggtcagaaggaagcgcattct
gggtcagctaatgtacgtacacgtgacaacaacgtgcacggggaacgttctattgataaa
atcataggaaggtttgctgatttcagtgcaagcagatgtggggatgctgaggaacagttt
taa
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