Ruditapes philippinarum (Manila clam): 132729538
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Entry
132729538 CDS
T09557
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 48-like
KO
K11858
ubiquitin carboxyl-terminal hydrolase 48 [EC:
3.4.19.12
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rphi01002
]
132729538
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rphi04121
]
132729538
Enzymes [BR:
rphi01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
132729538
Peptidases and inhibitors [BR:
rphi01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
132729538
Ubiquitin system [BR:
rphi04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
132729538
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
UCH_1
DUSP
ubiquitin
Usp-48
SRI
Motif
Other DBs
NCBI-GeneID:
132729538
NCBI-ProteinID:
XP_060571299
LinkDB
All DBs
Position
Unknown
AA seq
1164 aa
AA seq
DB search
MPQKPTLDKQCWQWAETTDPEDVNLSNVRSAYRLNLPNCKLGACKRQCKGNPYCVNCIGE
KVWFGKIEDSSWHDVQDPSEERRKPGMFVGLKNLGATCYVNTFLQLWFHNETVRKGIYKW
REIWGNNTTVDQWKPTSVCGHLQVIFGLLELSKRRYIDPSEFIKHLGLDAGLQQDAQEFS
KLFLSVLEENILQGNTTNVIKDQFCGNYAYVTRCSNCNNSSERMSEFYELDLNIQGHKSL
AESLKGFLEVEKLEGDNKYMCSKCNEKQDATRAIELKSLPPVLNLQLLRFVFDIKTGSKK
KLNSCIQFPDVLDMTEYLPENQNAIYDLNAVLIHRGPSAYSGHYVAHIKGKDSQNWFKFN
DEEIEKIKGKNLQLGSEEDLEGKKQKSPRIPKGHHSSKNAYMLVYTRRPPSTCNSVEAET
SKSENILSSQTKEEISYNNVSSSTSENSMFKTEIQSDLSASKSDEALKKIEREMIDSVPE
SDSEKSSSKNCITNSVLADTKKLIPNYVVKFVEKDNEEFEKWVNEMNSMKEENIAKGQEK
QETVKAIYKDLSYSGDSWDEFEWIPMNWLTKWLNDPATAPPIKLSSSLCSHGKLCPDQSL
KMKCVSEKGASQLISIYGGEVRLKGDESLCFKCIQQKCNLIRTKQLIVEDDKFISGKMKT
NFAAEKCYWVGKGSFRSWRRLAVELLTDSEGKIDENGEAGHNELNLENGELENHIDSNIG
ENIPGNVQSESSLGATNEIFEDVRKVKSESNIDKRSEVRDANSGKKNVDNVMGDNDEDSL
QFNEDLLCEEHGGLDPDINCRKAVPECVWLRLKHYFPNCAEFEITSPSCVKCTENIEEDN
KWKEMNRQLAATQKAALLDLFHDRKRPTAIHPVDGTFVLSTEFVNSWRQFVRDPLKNEPP
CKVVNELLLCEHNGFLFPPAEHGSFKSDDKITYITADEWRQVTSLFSFDNEITLVTYEEN
GKKEILTLPNVCNECLLKRLSYEESELFEYEKGIIYVRKHQKLEKIIENSNENSDSNQDD
PEFSEKSAPGSGRKRHNASEGIVTEPPEKVMKNGNGSKIVRKSQRHRRARGEKEVIMSSK
QTLKDLKLKIMGLFSVPPFDQNLYVDGRLLDENDRSLCDLRVASGSVIDLIADEPQEEPS
FMEEFVKESGMPESGFKGTNLLSA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaaaaaccaacgttagataaacaatgttggcaatgggctgagaccactgaccca
gaagatgtgaatcttagcaatgtgaggtctgcttataggctaaatctaccaaactgtaag
cttggtgcctgcaaaagacagtgtaaaggaaatccatattgtgtgaactgcataggtgag
aaggtatggtttggtaagattgaggatagtagctggcatgatgttcaagatcccagtgag
gagaggagaaaacctggaatgtttgttggactaaaaaatctaggtgctacatgctatgtg
aatactttcctacagttatggttccacaatgaaacagttaggaaaggtatatataaatgg
agggaaatttggggtaacaacacaactgtagatcagtggaagccaacctctgtctgtggt
catcttcaggttatatttggattactagagctgtcaaagagacgttacattgatccgagt
gagtttatcaaacaccttggccttgatgctggtcttcagcaagatgcccaagaattctct
aaactgttcttatctgtgttagaagaaaacattctccagggcaacaccaccaatgtcatt
aaagatcaattctgcggaaactatgcttatgttacaagatgtagtaactgcaataattcg
tcggagcgcatgtcggaattctatgagttagatctcaatatacaaggacacaaatctcta
gctgaatctttaaaaggttttcttgaggtagagaaacttgaaggagataataaatacatg
tgcagcaaatgtaatgaaaaacaagatgccacgcgagccattgaattaaaaagcttgcca
cctgttctgaatcttcagctactgaggtttgtttttgatattaaaactggttccaaaaag
aagttgaatagctgtatacagtttccggatgtgctggatatgacagaatatttacctgaa
aatcagaatgcaatttatgacctgaatgccgtgttaattcaccgaggtccatccgcatac
agtggtcattatgtggctcatataaaaggaaaagacagtcagaattggttcaaatttaat
gatgaagaaattgagaaaattaaaggtaaaaatcttcaattaggcagtgaggaagacttg
gaggggaaaaaacagaaatcaccccgcattccaaagggacatcactcttctaagaatgct
tatatgttagtttatacaagacggcctccctctacctgtaacagtgttgaagcagaaacc
tcaaaatcagaaaacattctatccagtcaaacaaaagaagaaataagttataataatgtt
tcatcttcaaccagtgaaaactcaatgtttaagactgaaatacaaagtgacctgtcagcc
tcaaagtctgacgaagccttgaaaaaaattgaaagagaaatgattgattctgttccagaa
agtgatagtgaaaaaagttctagtaaaaattgtataacaaattcagttttagctgatact
aaaaaattgattccaaactatgttgttaagtttgttgaaaaagacaatgaagaatttgaa
aaatgggtgaatgaaatgaactctatgaaagaagagaacattgcaaaaggtcaagagaag
caagagactgttaaagcaatatataaggacttatcttatagtggagacagctgggatgaa
tttgaatggatccctatgaactggttgacaaaatggttgaacgatcctgcaacagcccca
cccattaagctctcctcttccctttgcagtcatggcaaactttgtccggatcagtcattg
aaaatgaaatgtgtgtcagagaaaggggccagtcaattgatcagtatctatggaggtgag
gtaagattgaaaggtgatgagtcattgtgctttaagtgcattcaacaaaaatgtaatttg
ataagaactaaacaattaattgttgaagacgataaattcatatcaggcaagatgaaaaca
aactttgcagcagaaaaatgttactgggttgggaaaggttctttcagaagttggagaaga
ttagctgttgaattgcttacagattctgaagggaaaattgatgaaaatggtgaagctgga
cataatgagttaaatcttgaaaacggtgaattagaaaatcatattgattcgaatattggt
gaaaatattccgggaaatgtacagtctgaatccagtcttggtgcaactaatgagatcttt
gaagatgtaagaaaagtgaaaagtgagtcaaacattgacaagagatctgaggtcagggat
gcaaacagtgggaaaaagaatgtagacaatgtaatgggtgacaatgatgaagattcttta
cagtttaatgaagatttattatgtgaggaacacggtggccttgatccagatataaactgt
cgaaaagctgttccagaatgtgtttggctgaggctcaaacattactttccaaattgtgct
gagtttgaaataaccagtccatcttgtgtaaaatgtacagagaatattgaggaagataat
aagtggaaagaaatgaatcggcaactagcagccactcagaaagcagccttactagatttg
tttcatgacagaaagagacctacagctatacatccggttgatggtacttttgtactcagt
acagaatttgtgaactcttggagacagtttgttagagacccattaaaaaatgaacctcct
tgtaaagttgtaaatgaacttttactatgtgaacataacggattcttgtttccccctgct
gagcatggctcttttaaatctgatgataaaattacatatatcactgcagatgaatggaga
caagtaacctctttgtttagttttgacaatgaaataacattagtgacatatgaagagaat
ggtaagaaagagattcttacactgcctaatgtatgcaatgagtgtctgttgaaaagactg
agttatgaggagagtgaactgtttgagtatgagaaaggaataatttatgtaagaaagcat
caaaagttggagaaaattatagaaaactccaatgaaaacagtgattcgaaccaagatgat
cctgagtttagtgagaaatcagctccaggttcaggtaggaagaggcataatgctagtgag
ggaattgtcacggaaccaccggagaaggtgatgaaaaatgggaatggtagtaagattgtg
aggaaaagtcagaggcacaggagggctaggggcgagaaggaagtgatcatgtcgtcaaag
cagactcttaaggacttgaaactaaagatcatggggcttttctcagtgcctccgtttgat
cagaatctttatgttgatggtagattgctagatgaaaatgaccgcagtttgtgtgacttg
agggttgcctctggctctgtaattgatctcattgctgatgagccacaggaagaaccgagc
ttcatggaagagtttgtgaaagaatcaggaatgccggaatctggattcaagggaacaaat
ttattaagtgcataa
DBGET
integrated database retrieval system
