Ruditapes philippinarum (Manila clam): 132729703
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Entry
132729703 CDS
T09557
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132729703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132729703
Enzymes [BR:
rphi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
132729703
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
132729703
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
132729703
NCBI-ProteinID:
XP_060571507
LinkDB
All DBs
Position
Unknown
AA seq
305 aa
AA seq
DB search
MNGKQEEDIRDHMASKAMFAGLERNLDEKNIEQICSKVAKWFVDEEDIKVMILEKQEMKR
IPMYILSTELKGRFPAIWTTLNTEQKCIEIERISLEKRQELEELQKNDLRQHEDTLLENM
LGFTRIFKLMTQLKKPLLGHNCLMDLMLIYDKFYNPLPQSYTEFKTNLHSLFPTVFDTKH
IVLSMRRDMAQTGMLQQTSLGELYTDLESEKGQTIVLHSPVVNHAEGFDRYKSDELPHEA
GFDAYMCGVVFLRVGHILTFKDNKSSEVIPCMFRRYLQTLEKKRNKINVIRATINHIVSF
TPFYH
NT seq
917 nt
NT seq
+upstream
nt +downstream
nt
atgaatggcaagcaggaggaagacattagggaccatatggctagcaaagccatgtttgct
gggttagaaagaaatttagatgagaagaatatagaacagatatgttcaaaagttgcgaaa
tggtttgttgatgaagaagatatcaaagtgatgattttagaaaaacaagagatgaagaga
atacctatgtatattttaagtacagaactaaaaggaagattcccagcaatctggactact
ttaaatacagagcaaaaatgtatagagatagagagaataagtttagagaagagacaggag
ttagaggaattacagaaaaatgatctgagacaacatgaggacacacttctagaaaatatg
ctaggctttacacgtatattcaaacttatgacacagttaaaaaagccactgctaggacat
aactgtttgatggacttgatgctgatttatgataaattttacaaccctctacctcagtca
tatacagaatttaagacaaatcttcattcacttttcccaactgtgtttgacactaagcat
atagttttaagtatgagacgggatatggcacagactgggatgctgcaacaaacaagctta
ggtgaactttatacagatttagaaagcgagaaaggacaaacgatagtgttacattcacct
gttgttaaccatgccgagggatttgacagatataaatctgatgagttaccacatgaagca
ggttttgacgcgtatatgtgcggagttgtatttctgagagttggacatatactgacattc
aaagataataagtcctcagaagttataccatgtatgttccgaagatatttacaaacatta
gaaaagaaaagaaacaaaatcaacgtaattagagctactataaatcatattgtaagtttc
acaccattttatcatat
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