Ruditapes philippinarum (Manila clam): 132729892
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Entry
132729892 CDS
T09557
Name
(RefSeq) coatomer subunit alpha-like isoform X1
KO
K05236
coatomer subunit alpha
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rphi04131
]
132729892
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rphi04147
]
132729892
Membrane trafficking [BR:
rphi04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
132729892
Exosome [BR:
rphi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
132729892
Exosomal proteins of bladder cancer cells
132729892
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
WD40_CDC20-Fz
TPR_COPA_B
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_SCAP
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
GATase
Motif
Other DBs
NCBI-GeneID:
132729892
NCBI-ProteinID:
XP_060571712
LinkDB
All DBs
Position
Unknown
AA seq
1224 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWVLTSLFNGVIQLWDYRMCTLIDKFDEHDGPVRGICFH
FQQPLFVSGGDDYKIKVWNYKQRRCLFTLLGHQDYIRTTTFHHEYPWILSSSDDQTIRIW
NWQSRNCICVLAGHSHFVMCAQFHPSEDLIVSASLDQTVRVWDISGLRKKNVSPEQSQRA
TSLEDRLRSSGQPDLFGMSDAVVKHVLEGHDRGVNWCAFHPNLPLIVSGADDRQVKLWRM
NDSKAWEVDTCRGHYNNVSCCLFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRENDRF
WIMTAHPSLNLFAAGHDSGMIIFKLERERPAYAVSGHVLYYVKEKNLRKLDFTTNKDVPV
MQLRGGSRSPVFSMSYNPAENAVLLVTRTSNVENSTYDLYAIPKESDSKNPDAPEGKRSS
GLTAVWVARNRFAVLDRSHSIVIKNLKNEITKKVQAPNCEDIFYAGTGCLLLKDNDNVTL
FDVQQKRSLASVKISKVKSVIWSHDMSHVALISKHVIAICNRKLENLCTINENIRVKSGA
WEESGVFVYTTSNHIKYALTNGDHGIIRTLDLPIYITRVKGNSVHCLDREGRSRVLGIDP
TEFKFKLALVNRKYEEVLHMVRHAKLVGQSIISYLQKKGYPEVALHFVKDEKTRFGLALE
CGNLEIALEAARALDDQACWEKLGEAALLQGNHQIVEMSYQRTKNFDKLSFLYLITGNLE
KLKKMTKIAEIRKDTSGHFQNALFLGDVEERVKILKNCGQKSLAYLTAATNGLEEEAESL
KDSFGENERVPDLYPSASLLQPPVPITQQESNWPLLTVSKGFFEGAMAAKGGHSKMAAAE
DVDIEEAGAGWGDDDLGLDDEDEFGGGEGEIGEKDEEGGGWDVDDDLELPPDLDVPSTPT
GGGEGFFVPPTKGTSQAQVWCNNSQLPVDHVLAGSYETAMRLLHDQVGVVDFEEYKQLFL
QTYSRSRTCYQGLPSLQPLFGYPHRNWKEAGGRNGVPAVGLKLNNLVQQLQVAYNLTTAG
KFGDATEKFRSILLSVPLLVVDTKQEIAEAQQLIEICREYIVGLTMEQTRKELPKATLDD
QKRLCEMAAYFTHCKLQPVHLILTLRTAQNLFFKLKNLKTAASFARRLLELGPKPDIATT
ARKILAACEKNPVDEHDLKYDEHNPFDICAASYTPIYKGKPVVKCPLSGACYLPEYKGEV
CRVTKVTEIGKDSIGLRISQIQFR
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgttaactaaatttgaaacaaagtcggcgcgtgtgaaaggtctatcctttcatccaaaa
agaccatgggtgttgacaagtttattcaatggtgtaatacagctatgggattatcgtatg
tgcacactcattgacaagtttgatgaacatgatggtcctgtcagaggtatatgtttccat
ttccagcagcctctatttgtgtccggaggtgatgactacaaaattaaggtttggaattac
aagcagaggagatgtttatttacactacttggacaccaggactatatcagaacaaccaca
tttcaccatgagtacccatggatcctaagttcatctgatgatcagacaatacgtatttgg
aactggcagtctagaaactgcatctgtgtgctggctggtcacagtcactttgtgatgtgt
gcacaattccatccatcagaggacctgatagtgtcagcatcacttgatcagactgtaaga
gtatgggacatctcggggcttaggaagaaaaacgtgtcaccagaacagtcacagagagca
acttctctagaggacagactacgtagttcaggacagcctgatctgtttggaatgtctgat
gcggtggttaagcatgtattagaaggtcatgacaggggagttaactggtgtgcgttccat
cctaacctgcccctgattgtgtcgggagctgatgatcgccaagttaaattgtggagaatg
aatgattccaaagcttgggaggtagatacatgcaggggacattataataatgtgtcatgt
tgcctgttccacccaagacaagaactgatccttagtaactccgaagataagagcatacgt
gtatgggatatgagcaaaagaactggcgttcagacgttccgcagggagaatgataggttt
tggataatgacagcccacccttcactgaacctgtttgccgcaggtcacgacagcggaatg
atcatctttaaactggagagagagcgaccggcatacgctgtctccggtcatgtactgtac
tatgtgaaggagaagaacctcagaaaactggactttacaacaaacaaagatgtccctgtc
atgcaacttagaggtggatctaggtcacctgtattcagcatgtcatacaaccctgcagag
aatgctgtgctccttgttacacgtacaagtaatgtagaaaacagcacatacgatctgtat
gctataccaaaagaatcagactccaagaatccagatgctcctgaagggaagagatcatca
ggtctgactgctgtgtgggttgctaggaaccgatttgctgtgttagacagaagtcactct
attgtaatcaagaacttgaagaatgaaattaccaagaaagttcaagcccccaactgtgag
gatatattctacgctggtacaggctgccttctactcaaggacaatgataatgtcacattg
tttgatgtccagcaaaaaaggagtttagcaagtgtgaagatctccaaggtgaaatctgtc
atctggtctcacgacatgtctcatgtagctctcatcagtaaacatgtaatcgctatctgc
aacagaaagttggagaatctgtgtacaataaatgagaatattcgagtgaagagcggtgcg
tgggaggagagcggtgtatttgtatacaccactagtaaccacatcaaatatgctctcact
aatggtgaccatggtattatacgaacactagacctgcctatctacattacacgagtgaaa
ggtaacagtgttcattgtctagacagagaaggaagatctagggtgctcggtattgacccc
acagagttcaagtttaaattggcccttgtcaacagaaagtatgaggaggtgttacatatg
gtgagacacgccaagttggtgggtcagtctatcatctcctacctacagaagaaaggatac
ccagaggtggctctacatttcgtcaaggacgagaaaacaagatttggacttgccctagaa
tgcggaaatctcgagattgcgcttgaagcagctcgggctctggatgaccaggcatgctgg
gagaaactgggcgaggcagccctcctgcagggtaaccatcagattgtagagatgtcctac
cagagaacaaagaactttgataaactctcattcctgtatctcatcacaggaaacctggaa
aaactcaagaaaatgacaaaaatagctgagattcgcaaggatacaagtggtcatttccag
aatgctctattccttggtgatgtggaggagagagttaaaatcctgaaaaactgcggacaa
aaatcattggcgtacctgaccgcagctaccaatggcctagaggaggaggcagagtcattg
aaggattcattcggggagaatgagagggtgccagacctgtaccccagtgcttccctgctc
cagcctccagtacctatcacccagcaggaatctaactggccactgttgacagtatctaag
ggattctttgagggagctatggctgctaagggaggtcatagcaagatggccgccgctgag
gatgttgatatagaggaagctggtgcgggctggggcgatgatgaccttggtttggatgat
gaggatgaatttggtggaggagagggcgagattggtgagaaagatgaggagggcggaggc
tgggatgttgatgatgaccttgaacttccacctgaccttgatgtgccctcaacaccaact
gggggcggggaaggtttctttgtgccgcctacaaagggaacaagtcaggcccaggtgtgg
tgtaacaactcccagctacctgttgaccatgtgctggcaggatcatatgagacagccatg
aggctgttacatgaccaagtgggtgtggtagacttcgaggagtacaagcagctgtttcta
cagacttacagtagaagtaggacatgttaccaaggactaccatctttacaacctctcttt
ggatacccacatagaaactggaaggaagctggaggtagaaatggcgtaccagctgtaggg
ctcaaactaaacaacttagtacagcagctacaggttgcctataaccttaccacagctgga
aaatttggtgatgcaacagaaaaatttaggtctattcttctcagtgtaccattgcttgtg
gtggatactaaacaagaaattgctgaggctcagcagttgatagagatatgtagagagtat
attgtaggtctaactatggagcagaccaggaaagaattacctaaagctacattagacgat
cagaaaagattatgtgagatggcggcatatttcacccattgcaagctacaacctgttcac
cttatactgactttgagaacggcacagaatttgttctttaaattgaaaaatcttaaaaca
gcagcttcatttgctagaagattactggagctagggccaaaaccagatattgccactaca
gcaagaaagattttagctgcatgtgagaagaatccagtagatgaacatgatttaaaatat
gatgaacataatccatttgatatatgtgcagcctcatacactcctatatacaaaggtaaa
ccagttgttaaatgtccacttagtggagcctgttacctaccagaatacaagggagaagtt
tgtagagttactaaggtgacggagattggcaaagattctattggattaagaatcagtcaa
atacaatttagataa
DBGET
integrated database retrieval system
