| Entry |
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| Name |
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
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| KO |
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| Organism |
rphi Ruditapes philippinarum (Manila clam)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:rphi00001]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132730672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:rphi03019]
132730672
Messenger RNA biogenesis [BR:rphi03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
132730672
mRNA cycle factors
Common to processing body (P body) and stress granule
132730672
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
Unknown
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| AA seq |
613 aa
MSSVAQMLRQAEALKASVSDTSKTISETWVMRQKLEDVYKKILLTDLEYALDKKVEQELW
NHAFKNQINNLQSQAKDKQNVKRAEIQATLNLFLETASGFYLQFLQLLCTTFKLDLPFRR
KSAFYGVMKERTPMKLKVTPPKKSSCLYVCQHCLVHLGDIARYRQQIDQAQTYYWHAAYL
VPFNGQPYNQLAILEAAKGNKLSTVFYYIRSLAVKVPFPVAATNLEKLYAKLTKETPDFK
GKLSASEMITGFLQFHALVHLCTDLIKAEELSDKLAAGLPAHVTSQSFPWQVLVHIVAIN
IFAMNHVQHMPESSPESGMTNGDTELTDDEERCFNLVFKLTVNMMDILLQYTPKQEHKVC
DYFTLPAVKLLLDWLKLNPQNFDHPILRNSTLWSNLCKVLNSIQDWQIKDGEQDLSKYED
LPLPEDAELRCFQPIEKAQSGWSYSKLPAEGLASDIEVRLRCHRLLEHGHWIKEEQPSVQ
LSVKRSTAGSLQFSSPTPPPTNKITKTVTLSVPNTHSNHTTSLMSTAPSPERKSNRQNVA
IQKRVGICHNARKQAEQYGRKSVKIQRRANSPKYLRVPTSEPLFFKTAGSQRQPGPALPD
QGVQSSPSPSKQQ |
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| NT seq |
1839 nt +upstreamnt +downstreamnt
atgagttcagtggcccagatgttaagacaagcggaggccctgaaggcaagtgtatctgat
accagtaaaaccatatccgagacttgggtaatgagacagaaacttgaagatgtttacaaa
aaaattctcctcactgaccttgagtatgctctggacaagaaagtggagcaagaactatgg
aaccatgcattcaaaaatcaaataaacaatttacagtcacaagcaaaagacaaacagaat
gttaaaagagcagagattcaggccacacttaatttattcctggaaacagcaagtggtttc
tatctacagtttctccaacttttatgtacaacgttcaaattagatcttccgttcagaaga
aaatctgctttctacggtgtcatgaaagagaggacaccaatgaaactaaaagtaactcca
ccaaagaagagttcctgtttatatgtgtgccagcattgtttggtacaccttggagatata
gcaaggtatagacagcagatagatcaggctcaaacctactactggcatgctgcatacctt
gtaccatttaatggtcaaccttacaatcagttagctatattagaggctgctaaagggaac
aaactctctacagtgttctattatatacgcagtctagctgttaaagtgccatttcctgtt
gcggctaccaatcttgaaaaactctatgcaaaacttacaaaagaaactccagatttcaaa
gggaagttatctgctagtgaaatgatcacaggcttcctacagttccatgccctagttcat
ctttgtacagatctgataaaagcagaagaactttctgataaattggccgcaggtcttcca
gcccatgtgacctcacaaagtttcccatggcaagtactcgtgcatatcgtggcaatcaac
atctttgcaatgaatcacgtgcaacacatgccagaaagttctccagaatcagggatgact
aatggggatacagaactaacagacgatgaggaaagatgctttaatctggtttttaaattg
acagtgaacatgatggatattcttctacagtatacacctaaacaagaacataaagtgtgt
gactattttactctacctgctgtcaaacttctattagactggcttaaactgaatcctcaa
aacttcgatcatcctatactgagaaactctacgttatggagcaacttgtgtaaagtatta
aatagtattcaagactggcagataaaagatggggagcaagatttgtctaaatatgaagat
ttgccattaccagaagatgcagagttgagatgttttcaaccaatagaaaaagctcaaagt
gggtggagttacagtaagctgccagcagagggtcttgcgtcagatatagaggtgcgcttg
agatgccatagattactggagcacggtcattggataaaggaagaacaaccaagtgttcaa
ttatctgttaagaggagcacagcaggaagtttacagtttagttcccctaccccaccccct
acaaataagataacaaagactgtgaccctgtctgtaccaaacacacactcaaatcataca
acttccttgatgagcactgcacccagtccagagaggaaatctaacagacaaaatgttgct
atacagaagagggtaggcatttgccataatgccagaaagcaggcagagcagtacgggcgt
aaaagtgttaaaattcaaagacgagccaattcaccaaaatacctgcgggttccaacttca
gaaccattgttctttaaaactgcgggaagtcagcgtcagccggggccagctttaccggac
cagggcgttcagtcctctccttcaccatctaaacagcag |
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