Ruditapes philippinarum (Manila clam): 132730684
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Entry
132730684 CDS
T09557
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132730684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132730684
03012 Translation factors [BR:
rphi03012
]
132730684
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132730684
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
132730684
Translation factors [BR:
rphi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
132730684
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
HA2_N
nSTAND3
ATPase
AAA_22
AAA_19
AAA_14
NPHP3_N
Cas3-like_C_2
PhoH
TsaE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
132730684
NCBI-ProteinID:
XP_060572646
LinkDB
All DBs
Position
Unknown
AA seq
1083 aa
AA seq
DB search
MLNGVFHKAFRLQTKSKVIDCSYLVSCVSQEMYRDERRGRGYRGWGRGGQRRYYHDGNNV
EEPDEQRYDNFNKPRGGKRGRGRQEYSDRDGGRSEGRDRPPRGERPPRGEGRERPPPGLK
GKEIGMWYAKKSKAKAEQRDKDMRPELKMVQHQQNNIRQLLHEVRSSRECPPQPTRSGAE
LPPASEGDEGMDWFEDNDSKRQRFSDVSENHDVDEGTASSSYQESTDIDDDDDDDELPVI
TERMEFLNNDNFVTKDEKDIFIPDTPTRVDQGLSKKFLEIFQQRKKDSLYKNMKKIREQL
PIHNEKQRILDIIHENQVVVLSGETGCGKTTQVPQYILDDFLEQERGSECSIICTQPRRI
SAITVAERVAEERAEECGNDNSVGYMIRLEHKLPRRAGSILYCTTGILLKMLEGDPLLER
ATHVILDEIHERDLLSDFILIIMKDILQKRPELKVVLMSATLNAEEFSKYFNNCPMIHAK
GFTYPVKEYLLEDVIELLRYEVPEEMLRTSKYEKRRRKKLGGIEMMEEDMREAWLRNLDD
RYSRSTRDALFDMDMTKVDLKLIKELIWVLITSKPDGAILVFVPGMSHIKDLHDLLSKDQ
SFRSAGCNVIGLHSMLPTMREVFQKSPEGTRKIVIATNIAETSITIDDVVYVIDCGQTKI
TGFTPENDLATLHNVLVSRANSKQRRGRAGRVQPGECYHLYTSLHESLMVDQHPPEILRT
RLEELCLRVKCLNLGKVMPFVKKAMQPPSAEAIESAIVKLQDLNALDKDENLLPLGRHLA
QIPLDPHTGKMILFGAIFGCLDPILSIAACLSFKDPFVTPLGKEKLGDMAKLEMSAGSLS
DHILLVNALQTWKRARSRGTEHSLCWKNFMSNSTLISLDKMRNQLAGLLCDLGFITSKDP
SQSAANRNSGNTALVKAIVSAGLYPNVAKIKSLPTKYRPMRFLVKDNSRCELHPKSVVKD
VKSPGTQWVVFHKKMKTTSVFLYDCTLVSPYSLLFFGGDIKHVYDNNEGTVCVDDWIRFK
ASSDIVKLVMELRHELDCVLDTLIRESDGTNLDPRTKQGAIIKAIIDLVTTEAAENNFEE
DQR
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgcttaatggtgtttttcataaggcgtttagactacaaacaaaatcaaaagttatagat
tgcagttatttagtttcttgtgtttctcaagaaatgtatagagatgaaagaagaggacgg
ggttatagaggttggggtcgagggggacagagacggtattatcatgatggtaacaacgta
gaggagccagatgaacagagatatgacaatttcaataaacctagaggaggtaaaagaggt
agaggtagacaagaatacagtgatagagatggaggtagaagtgaaggacgtgatagacca
ccaagaggtgaaagaccaccaagaggtgaaggacgtgaaagaccaccacctgggctgaaa
ggcaaagaaatcgggatgtggtatgcaaaaaaaagcaaagccaaagcggaacagagagat
aaagatatgaggccagaattgaagatggttcaacatcagcagaacaatatccgccaatta
ttacatgaagtaagatcaagccgagaatgtccccctcaaccaacaagatctggtgctgag
ctgcccccagcaagtgagggggatgaaggaatggactggtttgaagacaatgattcaaag
agacaacgattttctgatgtatcagaaaaccatgatgtagatgaaggcactgctagttct
agttatcaagaatctactgatatagatgatgatgatgatgatgatgaattaccagtgatt
acagaaaggatggagttcctcaacaatgataattttgtaacgaaagatgaaaaagatatt
ttcatacctgacacaccaacaagagttgatcaagggcttagtaagaaatttttagaaata
ttccagcaaaggaaaaaagactcactatataaaaatatgaagaaaattcgggagcagtta
cccatacataatgaaaaacagagaattttagatatcatacatgagaaccaagttgttgta
ctgagtggagaaactggctgtggcaaaactacacaggtaccacaatatatattagatgat
tttctggagcaagagagaggatctgagtgttcaattatctgtactcaaccaaggcgtata
agtgcaataacagttgcggagagagtggccgaagagagggcggaagagtgtggcaatgat
aactctgtgggctatatgatacgacttgaacacaagttgccaagaagagctgggagtatc
ctttattgtacaactggtatactgttgaagatgttggaaggcgatccattattggaaagg
gcgactcatgtgatattagatgagatacacgaaagagatcttttgtcggactttattctc
atcattatgaaggatattttacagaaacgaccggagctcaaagttgtccttatgagtgcc
actctgaatgctgaggaattctcaaaatatttcaataactgtccaatgatacatgccaag
ggatttacatacccagtgaaagaatatctccttgaggatgtgattgaacttcttagatat
gaagtgcctgaagaaatgttaaggacttcaaaatatgaaaaaaggaggagaaaaaagtta
ggtggaattgagatgatggaggaggatatgagggaggcgtggcttcgtaaccttgacgac
aggtactctaggagcacacgggatgcattgtttgatatggacatgacaaaagttgatcta
aaactgattaaggaactgatatgggttttaataacctcaaaaccagatggagcaattctt
gtttttgtaccaggcatgtctcatattaaagatcttcatgacttgttatcaaaagaccag
tcctttagatctgctggttgtaatgtaatagggttacattcaatgttaccaactatgaga
gaagtgttccaaaaatctccggagggcacgagaaaaattgtcatagcaacaaatattgca
gaaacaagtataacaatagatgatgtagtgtatgtgatagattgtggacaaaccaaaata
actggatttacgccagaaaatgatctcgccacacttcacaacgtgcttgtctcccgtgca
aactccaaacagagacgtggaagagctggaagggtgcagccaggtgaatgttaccatttg
tatacaagtctacatgaatcattgatggtagatcaacatccacctgaaatattgagaact
agactggaagagttatgtctacgtgtaaaatgtttaaatcttgggaaagtaatgccgttt
gtgaagaaagctatgcaacctccatctgctgaggctatagaatctgccattgtgaagcta
caagatctgaatgcgttggacaaagatgagaaccttttgccacttggtagacatctggca
cagattccattagaccctcacacaggcaagatgatcctgtttggggcgatatttggatgc
cttgatcctatactatctattgcagcctgtcttagtttcaaagatccttttgttactcca
ttgggcaaggaaaagttaggtgacatggcaaagttagaaatgtctgctggatcgttgagt
gatcatatattattggtgaatgccctccagacttggaaaagagcaagaagtcgtggcact
gaacatagtctctgctggaagaatttcatgtcaaattccacattaatatcactagacaag
atgaggaatcaacttgctggactattgtgtgatctcggatttataacgtccaaagatcca
tcacagagtgccgccaatcggaattctggcaatacagctcttgtaaaagctatagtgagt
gctggactttatcctaatgtagcaaaaataaaaagtttaccaactaaatacagacctatg
aggtttttagtgaaggataacagcagatgtgagctacatcctaaatcagttgttaaggat
gttaaatctccaggtacccagtgggttgtctttcacaagaaaatgaaaactacatctgtg
tttctatatgactgtacattagtgtccccgtattctctgttgttcttcggtggagatata
aaacatgtctatgacaacaatgaaggaacagtgtgtgtagatgactggatcagattcaaa
gcttcatctgatattgtcaaacttgttatggaattaagacatgagctggactgtgtacta
gacacattgataagagaaagtgatggcactaatttggacccgagaactaaacaaggtgcc
attatcaaggcaattatagacttagtgaccacggaagctgctgaaaataattttgaagaa
gaccagagatga
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