Ruditapes philippinarum (Manila clam): 132731312
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Entry
132731312 CDS
T09557
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 39-like
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132731312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rphi03041
]
132731312
Spliceosome [BR:
rphi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
132731312
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
SR-25
zf-UBP_var
CTNNB1_binding
Tim54
BNIP2
Motif
Other DBs
NCBI-GeneID:
132731312
NCBI-ProteinID:
XP_060573460
LinkDB
All DBs
Position
Unknown
AA seq
592 aa
AA seq
DB search
MAENVTFSRDNNDSIKEVSPLKRKVNETETESNSKSSSKRSKNDDDDTRKERKKEKKSKR
SREERKKMKEVKKEKIDEKFYEEEIAPVQDPKVDKSRICPYLDTINRSVLDFDFEKLCSV
SLSHINVYACLVCGKYYQGRGKLSHAYTHSVQDSHHVFLNLSTHKFYCIPDNYEVIDSSL
EDIIYVLNPTFSTRHIQTLDKSAKMSRAYDGTTYLPGIVGLNNIKANDYCNVILQALSHV
SPLRNYFLQEESYKGIKRPPGDQMFLVVQRFGELLRKLWNPRNFKAHVSPHEMLQSVVLC
SKKKFQITQQGDALEFMSWFLNALHGALNGTKKLNSSIINKTFRGKMRVYSRKVPPLEMA
EHEKQKLLLTEEYQETMSEIPWLYLTCDLPAQPLYPDELQENIIPQVPFHTILAKFNGTF
EKEYKTYKDSTLKRFELTRLPPYIIVYVKRFTKNFFVQEKNPTIVNFPIKNIDFGDLLSP
EVRAIHRNTTYDLMANIIHDGAPGPGKGTYRAHILHKGSGKWYELQDLHVADILPQMITL
SESYIQIFELRTDIPNPAFTKEKPAGTSSNSTEKQGGVKNGNQQTVDMDLSS
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaaacgtaacgttttcgcgtgataataatgattctatcaaagaagtcagtccc
cttaagcgtaaagtaaatgaaacggagacagagagcaactcaaagtcttcttctaaacga
tcaaaaaatgatgacgatgacactagaaaagagagaaagaaggagaaaaaatccaaaaga
agtagagaagaaaggaaaaaaatgaaagaagttaagaaagaaaaaatagatgaaaagttc
tatgaagaagaaattgcaccagttcaagaccctaaagttgataagagtaggatttgtcca
tatcttgatacaatcaacagatctgtattagactttgactttgagaagctgtgttcagta
tctctatctcacattaatgtttatgcctgccttgtttgtggaaagtattaccaaggtaga
ggaaagttgtcacatgcatatacacacagtgtacaagatagccatcatgtcttcctgaat
ttatcaacacacaagttttattgtattcctgataattatgaagttattgactcatcttta
gaagatataatttatgttctgaatccaacattcagcactagacacattcaaacattggat
aaaagtgctaaaatgtctcgggcttatgatggtacaacatatctaccaggtattgttggt
ttaaacaacataaaggcaaatgactactgtaatgttatattgcaggcactatcacatgtg
tcaccactgaggaactactttctacaagaggagagttataaaggaatcaagagaccacca
ggtgaccagatgtttctcgtggtacagaggtttggggagttgctacgtaaattgtggaat
ccacgtaatttcaaggctcacgttagtccacatgaaatgttacaatctgttgtactatgc
agtaagaagaaattccagataacacagcaaggagatgccctggaattcatgtcctggttt
ctaaatgctctgcatggagctttaaatggtacaaagaaattgaatagctctataatcaac
aagacattcagaggcaagatgagagtgtactctagaaaggttccaccactagaaatggca
gaacatgagaagcagaaattgttacttacagaggaatatcaagagacgatgtctgagata
ccctggttatatctgacctgtgacctcccagcacaaccactatatcctgatgaattacag
gaaaatatcataccacaggttccctttcacacaattctagcaaaattcaacggtactttt
gagaaggaatataaaacatataaagattcaacattaaagagatttgagttaacaaggtta
ccaccatacatcattgtttatgttaagagatttacaaagaatttctttgttcaagagaag
aatcctactatagtcaacttcccaatcaagaacatagattttggagatttgttatcaccg
gaggtgcgagccattcacagaaacacaacatatgacctaatggctaatataatccatgac
ggagcaccagggccggggaagggaacttacagggcacatatactacataagggatcaggt
aaatggtatgagttacaagatttacatgtagcagatattctccctcagatgatcacacta
tcagagagttatatacagatctttgagctgagaactgacataccaaaccctgcatttaca
aaagaaaaaccagccggtaccagttcaaactccacagagaaacaaggtggggtaaaaaac
gggaaccagcaaacagttgacatggatttgagcagctga
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