Ruditapes philippinarum (Manila clam): 132731782
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Entry
132731782 CDS
T09557
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03020
RNA polymerase
rphi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
132731782
09124 Replication and repair
03420 Nucleotide excision repair
132731782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphi03021
]
132731782
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132731782
Enzymes [BR:
rphi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
132731782
Transcription machinery [BR:
rphi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
132731782
DNA repair and recombination proteins [BR:
rphi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
132731782
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
EutB
AcetDehyd-dimer
Motif
Other DBs
NCBI-GeneID:
132731782
NCBI-ProteinID:
XP_060574019
LinkDB
All DBs
Position
Unknown
AA seq
1956 aa
AA seq
DB search
MAYTGDSNAPLREVKKVQFGILGPDELRRMSVVEGGLRYSETMEGGRPKLGGLMDPRQGV
IDRTARCQTCAGNMSECPGHFAHIELAKPVFHIGFLTKSIKVLRCVCFYCSKLLVDPTSP
KVKDVMARSKGYPAKRLAHVYDLCKGRKLCEGGDEMDTKLEKDAAEGGEPKKGHGGCGRY
QPNIRRMGLELTCEWKKINEEGQERKILLTAERVHEIFKRISDEEAVMLGMDPKFARPDW
LICTVMPVPPLCVRPAVVMFGSARNQDDLTHKLSDIIKANNQLKRNEQNGAAAHIIAEDT
KMLQFHVATLTDNELPGLPRAVQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVI
TPDPNLRIDQVGVPRTIAQNMTFPEIVTPFNIDRLHELVRRGANQYPGAKYIVRDNGERI
DLRFHPKSSDLHLQIGYKVERHMQDGDFIVFNRQPTLHKMSMMCHQVKILPWSTFRMNLS
VTTPYNADFDGDEMNLHLAQSLETRAEISQLATVPRMIITPQSNRPVMGIVQDTLTAVRK
MTKRDVFLDRGQMMNLLMFLPSWDGHMPQPAILKPKPLWTGKQIFSLIIPGRVNLIRTHS
THPDEEDKGPYKWISPGDTKVLIEDGELISGILCKKSLGTSSGALAHVVFLEMGYEPAGF
LYGNIQTVINNWLLIEGHSIGIGDTIADPQTYIDIQDTIKKAKQDVYEVTEKAHMDLMEP
TPGNTLRQTFENQVNRILNDARDKTGSKAQKSLSDFNNFKAMVVAGSKGSKINISQVIAC
VGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGL
IDTAVKTAETGYIQRRLIKAMESVMVKYDGTIRNQVEQLVQLRYGEDGLEATRVEFQSMP
TLKPSNRAFEKNFKFDPTNERQLKKSLTEEVVRELLADAHAQAEIEQEWEQLKEDRDSLR
QIFPSGDSKIVLPCNLQRMIWNAHKIFKIDKRKTCEIHPLKIIEDVKYLCKRLTVVPGED
RLSVQANENATILMKVLIRSTFCSKRVIEEFRLSNEAFDWLIGEIETKFQHAQVHPGEMV
GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVFLIGQA
SRDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEWVNVYYEMPDFDVSKI
SAWLLRIELDRKKMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAEKLVLRLRIMNSEDS
KTQDEEEVADKMEDDVFLRCIESNLLSDMSLQGIEAIAKVYMHLPNTDDKKRIFITDEGE
FRAVAEWILETDGTSLTRVLSERDVDPVRTTTNDIVEVFATLGIEAVRKSIEKEMNHVIS
FDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQETGALARCSFEETVDILMEAAAHAE
HDPMKGVSEAIMLGQLARIGTGCFDLLLDAEKCKYGMEIPTNVGAGMMGGVGTGMFFGAG
ASPTQGMSPQMTPWQQSATPGYASAWSPGIGSGMTPGAAGFSPSAASESGYSPGYSPAWS
PQPGSPSSPSSPYIPSPRGAMSPSYSPTSPSYIPSSPAMSGGGTPQSPGYSPTSPSYSPT
SPGYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYSPSSPSYSPSSPSYSPSSPNYSPSSPSYS
PSSPSYSPSSPKYSPQSPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPSSPQYSVTSP
SYSPGSISDRGSHKYSPSSPQYSPTSPAYSPSSPQYSPPASPSYSPSSPQYSPASPSYSP
SSPQYSPSNTGYTPTTPKYPPTSPTYSAADDDSDME
NT seq
5871 nt
NT seq
+upstream
nt +downstream
nt
atggcttacactggagattcaaatgcaccattgcgtgaagtcaagaaagtgcagtttggt
atccttggtccagatgaactcagacgtatgtctgtggttgagggaggtttgcgatactcg
gaaaccatggagggaggacggccaaaactcggagggttgatggaccctcgacagggtgtc
atagacagaacagcaagatgtcagacatgtgctggaaacatgtccgagtgtccgggtcac
tttgcacatatagaattggcaaagccagtttttcatataggattcctcacaaagtcaatc
aaagtgctacgatgtgtgtgtttctactgctcaaaactacttgttgaccctacatcccca
aaagtgaaagatgtgatggcaaggtcaaaaggatatccagctaagagattggctcatgtt
tatgacctttgtaaaggtcgcaagctgtgtgaaggtggagacgagatggacacgaaacta
gaaaaagacgcagcagagggtggtgaaccgaaaaagggacatggaggttgtggaagatat
caaccaaacataagaagaatgggtctagaactgacttgtgaatggaagaaaattaatgaa
gaaggccaggagaggaagatacttctaacggcagaaagagttcatgaaattttcaagaga
atttcagatgaagaggcagttatgttaggaatggacccaaagtttgcgcgacctgattgg
ctgatatgtactgtgatgccggtaccccctctgtgtgtaagaccagccgttgtcatgttt
ggctcagctaggaaccaggatgatttaactcacaagttatcagacattataaaggctaac
aatcagttaaaacgtaatgaacagaatggagcggctgcacatatcatagctgaggataca
aaaatgttacagttccacgtggcaacactcactgataatgagttgcctggtctgccgagg
gcagtgcaaaagtctgggcgtcccctcaaatcaatcaaacagaggttgaagggtaaggaa
gggcgagttcgtggaaacttgatgggtaaacgtgtagatttttctgccagaaccgtcatc
acaccagatcccaatctgcgtattgatcaggtcggagtcccacgaacaattgcacagaat
atgacattcccggagattgtcaccccctttaacattgacagattacatgagttagtaaga
aggggagctaaccagtatccaggagctaaatatattgttcgagacaatggagaaagaatt
gatcttagatttcatccaaagtcaagtgatctacatctacaaattggatacaaggtagag
cgacacatgcaggatggtgattttattgtgtttaacagacagccaacacttcacaagatg
agtatgatgtgtcatcaggtgaaaatcttaccttggtcaacattcaggatgaacctcagt
gtcacaacaccatacaatgctgattttgatggtgacgagatgaatctccatttggcgcag
tctttggagactcgggcagagatctcacaattagctactgtacctcgtatgattatcacc
ccacagtcaaacagaccagtcatgggtattgtacaggacacgcttacagccgtcagaaaa
atgacaaaaagagacgtgtttcttgacaggggtcagatgatgaaccttctgatgtttctg
ccaagctgggatggtcacatgccccagccagcaatcctgaagcctaagccactatggaca
ggcaagcagattttctccctgatcattcctggtcgtgtaaacttgatcagaactcacagc
acacatccagacgaggaagataaaggtccgtacaagtggatctcacctggtgatactaag
gtgttgatagaagatggtgagcttatatcaggaatattgtgtaagaagtctctgggaaca
tcatctggtgctttggctcatgtcgtcttcctggagatgggatatgaacctgcaggtttc
ctgtatggtaatattcagacagttataaacaactggttgttgattgagggacacagtata
ggtataggagatactattgctgaccctcagacatatatagatatccaggataccatcaaa
aaagctaagcaagacgtgtacgaagtgacggaaaaagctcacatggacttgatggagccg
acaccaggtaatacactgagacagacgtttgagaatcaggtgaacagaattttgaacgat
gccagagacaagactggtagtaaagcccagaaatctctctccgatttcaacaatttcaaa
gctatggtggtggcaggctctaaaggttccaagattaatatttctcaggttattgcctgt
gtaggacaacagaacgtggaaggcaaacgtattccatttggtttccggcacagaacattg
ccacatttcatcaaggatgattacggtcccgagtcaagaggtttcgtggagaactcgtac
ctggccggtctgacaccgtcagagttttattttcacgctatgggaggtagagaaggtctt
attgatacagctgtcaaaacagctgaaactggatatattcagcgtcgtttgatcaaagct
atggagagtgttatggtgaagtatgatggaacaattagaaaccaggtagaacagcttgta
cagttgaggtacggtgaggacggtctagaggcaacaagggtcgagttccagtccatgcca
accctcaaaccatccaacagggccttcgaaaagaacttcaagtttgacccaactaatgaa
agacaattaaagaagagtttgacagaagaggtagtcagggaattactggctgacgctcac
gcccaggccgagatagagcaagaatgggaacaattgaaggaagatcgggattccctgcgg
cagattttcccgtcgggagacagcaagattgtactgccgtgtaatttacagagaatgatc
tggaatgctcataaaatcttcaagattgataaaaggaaaacatgtgagattcatcctctc
aaaatcattgaagatgtgaagtatttatgtaaaagactaactgtggtgccaggtgaggac
agacttagtgtacaggccaatgagaacgctacaattcttatgaaggttctcatccgatca
actttctgctctaaacgtgtcatagaagaattcaggctgtctaacgaggcatttgattgg
ctgattggagaaattgagaccaagttccaacatgcccaggttcaccctggtgagatggtg
ggagctctggctgcgcagtctctcggtgaaccagctacacagatgacactgaacactttc
cattacgctggtgtgtccgccaagaacgtaacacttggtgtacctcgtctaaaggagatc
attaatatctcaaagaaacccaaaactccgtcactgaccgttttcttgattggacaagct
tcacgagatgccgagaaagccaaggatgtattatgtagactagaacacacaactttacgt
aaagtcacagcaaacaccgccatctactacgatcctgacccacaaaacaccgtgattgcc
gaggatcaggaatgggtgaacgtttattatgagatgccagactttgatgtgtcgaagatt
tctgcctggctattgagaattgagctggatagaaagaagatgacagataaaaaattgact
atggaacaaatttctgagaaaatcactgctggtttcggtgatgacttgaactgtatattt
aacgacgacaatgctgagaagttagtgctacgtcttagaattatgaactcagaagatagc
aaaacacaagatgaggaggaagtagcagacaagatggaggacgatgtattcctccgatgt
atagagtccaatcttctctctgatatgtcactacaaggcattgaggctattgctaaggtg
tacatgcatctccccaacactgatgataagaagagaatctttataactgatgaaggagaa
tttagagctgtagctgaatggattctcgagacagatggtacgtcgttgactcgtgttctc
agtgaacgtgatgtcgacccagtgagaactacaaccaacgatattgtagaagtgtttgct
acactgggtatagaagctgtacgaaagtctattgagaaggaaatgaatcatgtcatctct
ttcgacggttcgtacgtcaactatcgtcacctggccttgctatgtgacgtaatgacagct
aaaggtcacttgatggccatcacacgtcacggtatcaacagacaagaaactggtgcctta
gctagatgttccttcgaggaaactgttgatattctgatggaagccgcagcccatgctgag
catgatcctatgaaaggtgtatcggaagccattatgttgggacagttggctcgtataggt
accggatgttttgacctacttctagatgcggagaaatgtaaatatggtatggagataccg
actaatgtaggggctggcatgatgggaggagttggaacaggaatgttctttggtgccgga
gccagtcctacacagggtatgtcacctcagatgacaccatggcaacagagtgctacacca
ggatacgccagtgcttggtcacctggtattggtagtggtatgacaccaggtgctgcaggg
ttctcaccttccgctgctagtgaaagtggatacagtccaggttacagtccagcctggtca
ccacagccaggttcacccagctcaccatctagtccatacataccaagtcctagaggagcc
atgtcgccaagttattcgccgacttcaccgtcgtacattccaagttctcctgctatgtct
ggtggcggaacaccacaaagtccgggttattcacctacaagcccgtcatacagtccaaca
agtccgggatattcaccaacgtcaccaaattatagcccaacttctccctcatattcacca
acaagtccctcgtacagcccaacaagtccatcatactcgccgacatcaccgtcgtacagc
ccaacatcaccaagttacagtccaacaagtccaagttactccccaacatccccaagttac
agtccaacttcaccatcgtacagcccaacttccccttcatacagcccaacaagcccaagt
tactccccaacaagcccctcttattcaccaacgtcaccaagctacagcccaacatctccg
tcatactccccaacatcaccaagttacagcccaacaagtcctagttacagtcctacaagc
ccaagctatagcccaactagccctagctatagccctacaagtccaagttacagcccaaca
tcaccaagttattcaccatcttcacccaactacagtccatcttccccgtcatacagtcca
tcaagtcctagctactcacccagtagccccaactacagcccaagtagtccaagctattca
ccaagtagccccagctactcaccgagcagccctaagtatagcccacagtctccatcgtac
agtccaacaagtcctagttactcgccatcaagccccaaatacagcccaacatctccaagt
tattctccaaccagtccaagttattccccaagttctccacaatacagtgttacatctccc
tcgtacagtccaggctctattagtgacaggggctctcacaagtacagtcccagctcacca
cagtacagccccacgtcaccagcatactccccatcaagtccgcagtattcacccccagca
agtccatcgtacagcccgtcaagtccccaatattccccagcctccccgtcgtacagcccg
tcaagtccccagtatagtccatcaaacactggatatacaccgacaactccgaaatatccc
ccgactagtccaacatatagtgctgcagatgatgatagtgacatggagtag
DBGET
integrated database retrieval system
