Ruditapes philippinarum (Manila clam): 132731942
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Entry
132731942 CDS
T09557
Name
(RefSeq) poly(A) polymerase beta-like isoform X1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132731942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132731942
Enzymes [BR:
rphi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
132731942
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
132731942
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
132731942
NCBI-ProteinID:
XP_060574226
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MSLDGTSGKYPGITSPISLDGPKPVDLKLSAKLEETMRPFGVFESDEELAHRMEVLNKVN
MLVKEWIRDVSRRKNNIPDNRIDSFGGKVCTFGSYRLGVHKKGADIDTLCVAPRHVDRSD
FFSSFVELLKEQPEVKDLRAVEEAYVPVIKMTFDGIELDMLFSRLALPTIPEDIDLRDEA
LLKNLDQKCVRSLNGCRVTDEILHLVPNVESFRMTLRAIKLWAKRRGIYSNSLGFLGGVS
WAMLVARVCQLYPNADPSTLVQKFFMVYSTWHWPQPVLLKEFQAENKLNLTVWDPRINPS
DRFHLMPIITPAYPCQNSTFNVTKSTRQIMMDEFKEGLDITTEIYKAGEDGDWSKLFEPS
NFFQKYKHYIVLTCSAEEENNYLEWQGYLESKIRLLVGNLERNLYISLAHVTPDSFGPLD
ETDRQYMCRWFIGLSFEKVENANVDLTFDIQSFTNIVYKQAIHIKLYKEDMRVEIKHVRR
KQLDQFVPADILTRGCKRSTKRSDARQSAGNLAKVASPDTRTLSHSKSDTELLHTGERET
NCDQNTDVKQEDSGDKQTKTQINGDTAEEKDQRKTPDLIVIEDEPEQKTPVHNNVLKKPI
QDTVGSPMHVDSGMNSPVYKKREGSPPGLNTPVKRSRSTDDSQGSCSPMHTDPSLHSPTL
KKDISISKTVEEFKEPMQIEEKSIPVILSGGKAIEKVTRGRRLPSKEVPDLLSPLAQNSA
TTPPNAATVPKHTIKMVLKR
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgtcactggacggtacttcagggaagtacccaggtattacttcaccaataagcctggat
ggtccaaagcctgtagatctgaaactgtcggccaaactagaagagacaatgaggcctttt
ggtgtatttgaaagtgatgaggagttagctcacagaatggaagtgctgaataaagtaaac
atgcttgtaaaggaatggatcagagatgtcagtagaagaaagaacaatattccagacaat
cgaatagattcctttggtggtaaagtgtgtacatttggatcatacagacttggagtacac
aaaaaaggtgctgatatagatacattatgtgtggctccaagacatgttgatagatcagat
ttcttttcatcttttgtggaacttcttaaagaacagccagaggtgaaagatctgagggct
gttgaagaagcatatgtacctgttatcaagatgacatttgatggtattgagcttgatatg
ttgttttctcggttagcgctgccaactataccagaggatattgatctcagagatgaagca
ctgttaaaaaatcttgaccaaaaatgtgtcagaagtcttaatggttgcagagtgactgat
gaaatattgcatcttgtaccaaatgttgaaagctttagaatgaccctgcgtgccatcaaa
ttatgggctaaaagacgaggaatatattccaactcattggggtttcttggtggtgtatca
tgggcaatgttggtggcacgtgtttgccagttatatccaaatgctgatccatctactctt
gtacaaaaattctttatggtttattcaacatggcattggccacagccagttctgttaaag
gagtttcaggctgagaacaaattaaatctaacagtttgggatccaaggataaacccttca
gatcggtttcacctcatgccaatcattacaccagcatatccatgtcagaactccacattt
aatgtcactaaatctaccagacaaatcatgatggacgaattcaaagaagggctggatatt
accactgaaatatataaagctggtgaagatggagattggagtaaattatttgaaccatca
aatttctttcaaaaatacaaacattacatagtattaacatgctctgcagaagaggaaaac
aattaccttgaatggcaagggtatctggaatcaaagatccgacttttagttgggaattta
gaaagaaatctctacatttcattagctcatgtaacacctgattcatttggtccattagat
gaaactgataggcaatatatgtgtcgatggtttattggtttgtctttcgagaaagtggag
aatgccaatgttgatctcacttttgacatacaaagtttcacaaatattgtatataaacag
gcaatacatataaaattatataaagaagatatgagggtggaaatcaaacatgttagaaga
aaacaactggaccaatttgtacctgctgatattctgacaagaggttgtaaaaggtccaca
aaacgttcggatgctcgtcagagtgcgggaaacttggccaaggttgcgtccccagataca
aggacattgtctcatagtaaatctgatacagaattattacacacgggagaacgggagact
aactgtgaccagaacactgacgtcaaacaggaagactctggtgacaaacagactaaaaca
caaatcaatggggatacagctgaagaaaaggaccaaaggaagacaccagatctgatagtg
atagaagatgagcctgagcagaaaacacctgtacacaataatgtcctcaaaaaacctata
caggacactgttggttcaccaatgcacgtagacagtggtatgaatagtccagtatacaag
aaaagagaaggatctccaccaggtttaaacacaccagtaaaacgctcaagatctacagat
gattctcagggaagctgttcacccatgcatacagaccctagtctgcacagtccaacatta
aagaaagacatatctatttctaaaactgtagaagaattcaaggaaccaatgcaaatagaa
gaaaaatccatacctgttatattgtcagggggtaaagctatagaaaaagtgacaagaggg
cggcggctaccaagcaaggaggtaccagatttgttgagcccactcgcacagaactctgcc
acgactccacccaatgcagcaacagtaccaaaacacacaattaaaatggtccttaaaaga
tga
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