KEGG   Ruditapes philippinarum (Manila clam): 132732262
Entry
132732262         CDS       T09557                                 
Name
(RefSeq) THO complex subunit 6 homolog
  KO
K13175  THO complex subunit 6
Organism
rphi  Ruditapes philippinarum (Manila clam)
Pathway
rphi03013  Nucleocytoplasmic transport
rphi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rphi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    132732262
  09122 Translation
   03013 Nucleocytoplasmic transport
    132732262
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rphi03019]
    132732262
   03041 Spliceosome [BR:rphi03041]
    132732262
Messenger RNA biogenesis [BR:rphi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     132732262
Spliceosome [BR:rphi03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    132732262
SSDB
Motif
Pfam: Beta-prop_IFT122_1st WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_WDR5 WD40_Prp19 WD40_CDC20-Fz WDR55 EIF3I Beta-prop_WDR36-Utp21_2nd NBCH_WD40 Beta-prop_EML_2 Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_NOL10_N Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR41 Beta-prop_ACSF4 DSE1_N Beta-prop_EIPR1 Beta-prop_WDR75_1st ASA1 TRM82_WD Beta-prop_WDR36-Utp21_1st Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_NUP159_NUP214 CFAP251_N PQQ_2
Other DBs
NCBI-GeneID: 132732262
NCBI-ProteinID: XP_060574634
LinkDB
Position
Unknown
AA seq 339 aa
MKEQESLLSKRRCLHTTVFSQSYSPCGKYLVAACNFGYVAVYSLVAALAPNADEDTRKPI
YSFKACEEGAIYSLISTETLLISAGNGDICAWKWSEIIDKAAKVVWTLRVPQHQVFTNPE
INSIVLDKQESGTYLYAGCGDNNVYAWDIETGELTQSFSGHKDYVHCVCTKNSSRECASA
SEDGTVRIWDCRVGGEAVHVLEPNKQELTARSDLGKWVACVDCDNNEDWLVCGGAPHLSS
WHLRSLAPVSVFNTPGATHNFVTFYDDTVISGGSEACVNHWFVNGDVKSKVPCSASTVFD
IKINTHSPTNKVLCAAGSSPKIDLCTNFGYKAFSLLFSI
NT seq 1020 nt   +upstreamnt  +downstreamnt
atgaaagaacaggaaagtttactatctaagagaagatgtttacatacaactgtgtttagt
cagtcttattcaccatgtgggaaataccttgtagctgcatgcaactttggttatgttgct
gtatatagtttggtagcagcactggcacctaatgctgatgaagacactaggaaaccaatt
tacagttttaaagcttgtgaagaaggagcaatatacagtcttatatcaacagaaacatta
cttatcagtgcaggtaatggtgatatatgtgcatggaaatggtcagagattatagataaa
gctgctaaagttgtctggacactaagggttcctcagcaccaggtgtttacaaacccagag
atcaactctattgtgttagataaacaagagtccggtacttacctgtacgctggatgtggg
gataacaatgtttatgcatgggatattgagacaggggagctaactcaatccttcagtggg
cacaaagattatgtacattgtgtgtgtacaaaaaattccagtagagaatgtgcgtctgct
tccgaagatggcacagtgagaatatgggattgtcgtgttggaggggaagctgtacatgtt
ctagaaccaaataaacaagaacttacggcacgatcagatctcggcaagtgggtggcttgt
gtagattgtgataacaacgaagactggttggtgtgcggaggggctccacatttatcatca
tggcacctgagatccctggccccagtatctgtgttcaacaccccaggggctacacacaat
tttgttaccttttatgatgatacagtaatctcaggtggcagtgaagcttgtgtaaaccat
tggtttgtaaatggagatgtgaagtctaaagtgccatgttcagctagtactgtgtttgac
attaaaatcaacacacattctccaacaaacaaggtactgtgtgcagcagggagcagtcct
aagatagacttgtgtacaaactttggatataaagccttctcccttctattttctatctga

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